PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678460535 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 204aa MW: 22878.8 Da PI: 7.1955 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 83.9 | 4e-26 | 12 | 88 | 4 | 82 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 k+ rh ki T +g++dRRvRlsa +a+++++Lqd+LG+d++ k+++WL+ +a +i l+ ++ ++ +c + + + 678460535 12 KRNRHTKIQTPKGMKDRRVRLSAYTAIQLYELQDRLGYDQPTKAVDWLISKARSEIARLNHSPPAAEFDCgS-RE--LGQ 88 899***********************************************************7777777732.22..222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-25 | 12 | 83 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 23.014 | 12 | 70 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MDADTEPEMR RKRNRHTKIQ TPKGMKDRRV RLSAYTAIQL YELQDRLGYD QPTKAVDWLI 60 SKARSEIARL NHSPPAAEFD CGSRELGQGA ATGSSFMNLT MNPLIPPPAE SLQSQNLALS 120 LYAARVQGNG FLVNHPMDTT CYPPPEHSSA HREMMMVMMD GTALEAHPWV PAPADHVGLQ 180 PWRCGGFRYP SQIYGGDKEE DNRN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 17 | 70 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 17 | 70 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678460535 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022947877.1 | 7e-25 | transcription factor TCP3-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4112 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-22 | TCP domain protein 10 |