PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460284
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 301aa    MW: 33579 Da    PI: 9.3968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460284genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+d+++++Ggg+W++ +++ g+ R++k+c++rw +yl
        678460284 15 KGPWTKEEDRKLLDYIRLHGGGNWRSLPAKAGLQRCGKSCRLRWANYL 62
                     79********************************************97 PP
2Myb_DNA-binding53.65.3e-1768111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++ +++++++lG++ W+tIa++++ gRt++++k++w++
        678460284  68 RGKLTAEEEKTILRLHALLGNR-WSTIAAYLP-GRTDNEIKNYWNT 111
                      7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3961062IPR017930Myb domain
SuperFamilySSF466899.56E-3013109IPR009057Homeodomain-like
SMARTSM007175.2E-131464IPR001005SANT/Myb domain
PfamPF002493.3E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-231669IPR009057Homeodomain-like
CDDcd001671.88E-111762No hitNo description
PROSITE profilePS5129424.57363117IPR017930Myb domain
SMARTSM007175.5E-1567115IPR001005SANT/Myb domain
PfamPF002491.8E-1568111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2570117IPR009057Homeodomain-like
CDDcd001671.18E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MQSNGEERTA VALRKGPWTK EEDRKLLDYI RLHGGGNWRS LPAKAGLQRC GKSCRLRWAN  60
YLRPDITRGK LTAEEEKTIL RLHALLGNRW STIAAYLPGR TDNEIKNYWN TRLKKRLARM  120
GIDPVTHRPK ETAAGGTVQS RRVAMLSHMA QWEMARLEAE TRLVREAELS SMLQLRWKST  180
TQLNPSSEVT ATSIPRCLDV LHVWKATASG HSFFSPTPTA TFSISSNSPD AKQGAPAVTN  240
DVVSSAHCSI LTPSSMENCS GFDPTGDSDF ISRDYVAELN EDGDYWTGLL SSAMNSPMFY  300
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460284
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071274.11e-100transcription factor MYB28-like isoform X2
SwissprotQ9LE632e-80MY106_ARATH; Transcription factor MYB106
SwissprotQ9LXF11e-80MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A059PRK92e-96A0A059PRK9_SALMI; MYB-related transcription factor
STRINGPOPTR_0008s08870.14e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-83myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]