PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678459994

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HSF

Protein Properties

Length: 421aa MW: 47997.9 Da PI: 4.4311

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678459994	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.9	4.9e-36	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k ye+++de++++lisw+++++sf+++de++fa ++LpkyFkh nfaSFvRQLn+YgF+k+++++ w+F+++ F kg+k+ll++i 678459994 14 FLVKCYEMVSDESTNDLISWTDSNDSFIIWDESKFAAQLLPKYFKHGNFASFVRQLNIYGFRKIDTDR---------WQFANEAFVKGQKHLLKSIS 101 9**************************************************************999.........**************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ 678459994 102 RRKQ 105 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.7E-34	10	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-54	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.8E-36	11	103	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.6E-18	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.8E-31	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.6E-18	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.6E-18	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MVRSLENGVS LPPFLVKCYE MVSDESTNDL ISWTDSNDSF IIWDESKFAA QLLPKYFKHG 60 NFASFVRQLN IYGFRKIDTD RWQFANEAFV KGQKHLLKSI SRRKQLQNHT QKTPVKEEDV 120 APPQPSDNEE KHAALWKEVE NLKQGKDALM QELKNLRQHQ EISQKKLILL RQQLNGMEKN 180 QQQMLSFIVM VMQSPEFMVQ FFQTMENSWR LSENGSSKLS EVTEDCELAP TDGTLIAYQP 240 PGDGFSLPTK GLEPTNHVDD LMDFDFSSEE MHDLMVNLDF IMSPRDDRLP LSLENIELSL 300 DSSDNLFTPD ASVNYRMLEQ LLLSSPSAED KQAIEFEDEP LDDSETQTTA TTQSQIQEVS 360 KDDHEMDSTH EKLQGLTQKL EELYSRRLTD TAGLQVLIGA SLHFLASKSI VGLFSGTAGD 420 I

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MVRSLENGVS LPPFLVKCYE MVSDESTNDL ISWTDSNDSF IIWDESKFAA QLLPKYFKHG  60
NFASFVRQLN IYGFRKIDTD RWQFANEAFV KGQKHLLKSI SRRKQLQNHT QKTPVKEEDV  120
APPQPSDNEE KHAALWKEVE NLKQGKDALM QELKNLRQHQ EISQKKLILL RQQLNGMEKN  180
QQQMLSFIVM VMQSPEFMVQ FFQTMENSWR LSENGSSKLS EVTEDCELAP TDGTLIAYQP  240
PGDGFSLPTK GLEPTNHVDD LMDFDFSSEE MHDLMVNLDF IMSPRDDRLP LSLENIELSL  300
DSSDNLFTPD ASVNYRMLEQ LLLSSPSAED KQAIEFEDEP LDDSETQTTA TTQSQIQEVS  360
KDDHEMDSTH EKLQGLTQKL EELYSRRLTD TAGLQVLIGA SLHFLASKSI VGLFSGTAGD  420
I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-25	10	103	25	129	Heat shock factor protein 1
5d5v_B	9e-25	10	103	25	129	Heat shock factor protein 1
5d5v_D	9e-25	10	103	25	129	Heat shock factor protein 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678459994

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070552.1	1e-142	heat stress transcription factor A-8
TrEMBL	A0A2Z7ARH9	1e-132	A0A2Z7ARH9_9LAMI; Heat stress transcription factor A-8
STRING	Migut.E00498.1.p	1e-127	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12235	22	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	3e-74	heat shock transcription factor A8