PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459768
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25276 Da    PI: 8.9147
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459768genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.6e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien   rqvtf+kRr+g+lKKA EL +LCdaevaviifsstgk+++++s
  678459768  9 KKIENANSRQVTFTKRRAGLLKKARELAILCDAEVAVIIFSSTGKIFDFAS 59
               68**********************************************986 PP
2K-box43.41.5e-151151851585
      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                ++ ++el+ L++ei +L+ ++ +llG+dL +L+l+eL  +eq+L+++l +i+++K++    + e+l+++ +
  678459768 115 KQTSEELQSLREEIAKLKASHMRLLGKDLRDLDLNELSDVEQKLNTGLMSIKERKEKKCQLENETLRRQVE 185
                56899************************************************************999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.889161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-32285IPR002100Transcription factor, MADS-box
CDDcd002653.97E-40271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.357114222IPR002487Transcription factor, K-box
PfamPF014862.5E-11115187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKK IENANSRQVT FTKRRAGLLK KARELAILCD AEVAVIIFSS TGKIFDFASS  60
SMERTLSRYK DRVSSPREDN SSEVCNLLLF ASLVSNVDLL MRSASVLLYI VKPKKQTSEE  120
LQSLREEIAK LKASHMRLLG KDLRDLDLNE LSDVEQKLNT GLMSIKERKE KKCQLENETL  180
RRQVELLGAL LPKESCETGG RGEEDEQSDT SLHLRLSYGR EGGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-23184183MEF2 CHIMERA
6bz1_B5e-23184183MEF2 CHIMERA
6bz1_C5e-23184183MEF2 CHIMERA
6bz1_D5e-23184183MEF2 CHIMERA
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459768
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881556.12e-58agamous-like MADS-box protein AGL15
TrEMBLA0A2P5DM131e-57A0A2P5DM13_PARAD; MADS-box transcription factor
TrEMBLA0A2P5EGZ51e-57A0A2P5EGZ5_TREOI; MADS-box transcription factor
STRINGEMJ206732e-57(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-44AGAMOUS-like 15