PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459593
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YB
Protein Properties Length: 239aa    MW: 26529.4 Da    PI: 4.9224
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459593genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.12.2e-2391179391
      NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c+re+++ti+++ +l al  lGf +yve++ +  +++r
  678459593  91 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALEVLGFGEYVEEVYTAYEQHR 179
                6899***************************************************************************9977666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-3990220IPR009072Histone-fold
SuperFamilySSF471134.19E-3592221IPR009072Histone-fold
PfamPF008083.3E-2094159IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVPLRDDELQ FRESAASAMS VSPRDPAKTP FTASRMRICL KFYMILLPIV AVIMYRISNV  60
QNVTSFKSLA APPSLSSVRG MEPSDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDTQ  120
DLLIECCVEF INLISSESNE VCNREEKRTI APEHVLKALE VLGFGEYVEE VYTAYEQHRA  180
ETVQDSMKSG KWSNGAEMTE EEAVAQQQRM FAEARARMNG GASAVNPPPV SDAQPKLEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-349221512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459593
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022729175.13e-95protein Dr1 homolog isoform X1
RefseqXP_022729182.13e-95protein Dr1 homolog isoform X1
RefseqXP_022729192.13e-95protein Dr1 homolog isoform X1
SwissprotP495923e-87NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1R3H0F66e-93A0A1R3H0F6_9ROSI; Transcription factor CBF/NF-Y/archaeal histone
STRINGGorai.001G064700.12e-93(Gossypium raimondii)
STRINGevm.model.supercontig_13.752e-93(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-89nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]