PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678459469

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HB-other

Protein Properties

Length: 1795aa MW: 200764 Da PI: 5.2974

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678459469	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.2	2.5e-17	40	94	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k 678459469 40 KRKMKTPTQLELLEKTYAVEAYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 94 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-16	27	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-15	31	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.196	35	95	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	37	99	IPR001356	Homeobox domain
CDD	cd00086	3.75E-13	38	95	No hit	No description
Pfam	PF00046	6.4E-15	40	94	IPR001356	Homeobox domain
PROSITE profile	PS50827	13.344	582	641	IPR018501	DDT domain
SMART	SM00571	2.4E-13	583	641	IPR018501	DDT domain
Pfam	PF02791	2.3E-12	591	638	IPR018501	DDT domain
Pfam	PF05066	2.4E-11	764	830	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.9E-7	968	1007	IPR028942	WHIM1 domain
Pfam	PF15613	8.6E-12	1143	1214	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1795 aa Download sequence Send to blast
MEVVSGTIGE TGDRDGGGID GTENVEVQRK DTPEREPKVK RKMKTPTQLE LLEKTYAVEA 60 YPSEALRAEL SVKLGLSDRQ LQMWFCHRRL KDRKPPKEKQ RKKAPSNSAV EAHSGGSAPE 120 IAVKNAVVPN DFSAGLFLFE NVDLQNQQRL HRVVHNVGAP VPKYEPPLAI SEQRAIRYVE 180 AQLGEQLRED GPILGMEFDP LPPGAFGAPI VPSENKNSSG RPYDAQPIQV TLLFNIFLSF 240 MSSCAAASRA VHEFQFLPEK PVAGNDLHER FSSPQIYHSS IDVASARFSL QSGASFSHCN 300 DQVPSGFIVS QLQIPKISGL AQHLDTVLTV APAVSTGIGS PHPIHSVTGA DVQITTPEKH 360 MVRDSERSER KRKAEVARIA KEVESHEKRI RKELEKQNLL MKKREEQMKK EMERQIREQR 420 KEEEKLLREK QREEERYQRE QRRELERREK FLQKEYIRAE KRRLKEEMRR EKEAAKLKAA 480 NDRAAARRVA KESIELFDDE RLELMELAGK TWNLPFSLGS RDFDALNSYK DKLMEFPPRS 540 VPLKRPFQSQ PWSDSEENVG NLLMEIHIKS HNPGYVVLDN RPSAALCDIL VWRFLIAFAD 600 VLGLWPFTLD EFVQSLHDFD SRLLGELHMA LLRCIINDIE EVARASIASM TANQTSAAIS 660 AGGHPKIVEG AYAWGFDLLS WQRLLTPLTW PEVLRQFALS AGFGPKLKKS SAKSACFDDE 720 NEGDNCADNI SNIRSGAAAE NAFAIMQEKG FSRPRRSRHR LTPGTVKFAA FHVLSVEGST 780 GLSILEVAEK IQVDWDLTTS KTPEASISAA LSRDTKLFER TAPSTYCVRS PYRKDPSDAE 840 LVLSAARERV RLFMNGNTDD EVAEDVEKDE AERDPDSESD VADDADVDNI SSGAKLAGAS 900 CSRETNMYEN GFECAEDNCQ EQLSGSVTDA TGGSSSRSTL KQPIDTITLN GGPAVQHLQN 960 TVADECDSGE HWVRGLTEGE YGTLSVEERL SALVALVETA NEGNAVRIAL EDRLEAANAL 1020 KKQMWAEAQL DKRRSKDDQM RLPCSTMASE GAEKNLVSDY GRSSQLRVDT KCDSQLGSPR 1080 MPLIDLNDQQ CDDIFFSDRM EAKEECSFVN ENLFEPSGYA TERTRSDLRV LINHQAEGVY 1140 TYRSLPLGLD RRYNRYWQFI ASSSCSDTGS GRIFVELCNN SWRMIDSEEA FHGLLSSLDV 1200 RGIRESHLHS MLRSIEPSFR DSVRRGLLHF NSGAQIHQET RKSFLEGFST SHTIATEHGG 1260 TEATDKMGKH EAFESWMWKE CFNCNTLAAL KYGTLRRPRL LEICKSCYAL VCPSFGWVCS 1320 CPDKGFDISS HDSQSEGKVE HRESSAAFTP SLSLPPRLKF LKAQLSTIEV LHRPKPGFVT 1380 LATFFSTCFT SVYSLQAYVP SESFNVCWSD DVRRSFALKL LMASTAEELL QVCQCNDIQS 1440 GFVLLWLIDF WGVQIITMLE CSIKRDFFSP NFTPTTELLS STKFGEISYS YSSSSSEVVP 1500 VIPWVPLTAA AVSLRLMEID SALYYAPEQK DGRQTDNEAG FFSVRTLASK YSSMCSSLGI 1560 HVNEASQDGN LRQSSGTHDP GNQAFGLRRG RGRPRGGSRT RGGKTNRLDR FPPRKGQQPA 1620 PVGGRKGRFS NRGRWRGART AAKYYVEESE KKEDTEAQED QPEPKEMLGR IEGAENAATS 1680 SGRSEFDEEN VQASGDEYHE VKGGFSGSKS GEFAEGCEIG GERRVQADDN DEEYDNDDDD 1740 GKGSEDLGDG EEYYTRGYEE GNQSHHQQQA QKLDEDEAYS PDSSPDSPSS SEYSY

Sequence ? help Back to Top

Protein Sequence Length: 1795 aa Download sequence Send to blast

MEVVSGTIGE TGDRDGGGID GTENVEVQRK DTPEREPKVK RKMKTPTQLE LLEKTYAVEA  60
YPSEALRAEL SVKLGLSDRQ LQMWFCHRRL KDRKPPKEKQ RKKAPSNSAV EAHSGGSAPE  120
IAVKNAVVPN DFSAGLFLFE NVDLQNQQRL HRVVHNVGAP VPKYEPPLAI SEQRAIRYVE  180
AQLGEQLRED GPILGMEFDP LPPGAFGAPI VPSENKNSSG RPYDAQPIQV TLLFNIFLSF  240
MSSCAAASRA VHEFQFLPEK PVAGNDLHER FSSPQIYHSS IDVASARFSL QSGASFSHCN  300
DQVPSGFIVS QLQIPKISGL AQHLDTVLTV APAVSTGIGS PHPIHSVTGA DVQITTPEKH  360
MVRDSERSER KRKAEVARIA KEVESHEKRI RKELEKQNLL MKKREEQMKK EMERQIREQR  420
KEEEKLLREK QREEERYQRE QRRELERREK FLQKEYIRAE KRRLKEEMRR EKEAAKLKAA  480
NDRAAARRVA KESIELFDDE RLELMELAGK TWNLPFSLGS RDFDALNSYK DKLMEFPPRS  540
VPLKRPFQSQ PWSDSEENVG NLLMEIHIKS HNPGYVVLDN RPSAALCDIL VWRFLIAFAD  600
VLGLWPFTLD EFVQSLHDFD SRLLGELHMA LLRCIINDIE EVARASIASM TANQTSAAIS  660
AGGHPKIVEG AYAWGFDLLS WQRLLTPLTW PEVLRQFALS AGFGPKLKKS SAKSACFDDE  720
NEGDNCADNI SNIRSGAAAE NAFAIMQEKG FSRPRRSRHR LTPGTVKFAA FHVLSVEGST  780
GLSILEVAEK IQVDWDLTTS KTPEASISAA LSRDTKLFER TAPSTYCVRS PYRKDPSDAE  840
LVLSAARERV RLFMNGNTDD EVAEDVEKDE AERDPDSESD VADDADVDNI SSGAKLAGAS  900
CSRETNMYEN GFECAEDNCQ EQLSGSVTDA TGGSSSRSTL KQPIDTITLN GGPAVQHLQN  960
TVADECDSGE HWVRGLTEGE YGTLSVEERL SALVALVETA NEGNAVRIAL EDRLEAANAL  1020
KKQMWAEAQL DKRRSKDDQM RLPCSTMASE GAEKNLVSDY GRSSQLRVDT KCDSQLGSPR  1080
MPLIDLNDQQ CDDIFFSDRM EAKEECSFVN ENLFEPSGYA TERTRSDLRV LINHQAEGVY  1140
TYRSLPLGLD RRYNRYWQFI ASSSCSDTGS GRIFVELCNN SWRMIDSEEA FHGLLSSLDV  1200
RGIRESHLHS MLRSIEPSFR DSVRRGLLHF NSGAQIHQET RKSFLEGFST SHTIATEHGG  1260
TEATDKMGKH EAFESWMWKE CFNCNTLAAL KYGTLRRPRL LEICKSCYAL VCPSFGWVCS  1320
CPDKGFDISS HDSQSEGKVE HRESSAAFTP SLSLPPRLKF LKAQLSTIEV LHRPKPGFVT  1380
LATFFSTCFT SVYSLQAYVP SESFNVCWSD DVRRSFALKL LMASTAEELL QVCQCNDIQS  1440
GFVLLWLIDF WGVQIITMLE CSIKRDFFSP NFTPTTELLS STKFGEISYS YSSSSSEVVP  1500
VIPWVPLTAA AVSLRLMEID SALYYAPEQK DGRQTDNEAG FFSVRTLASK YSSMCSSLGI  1560
HVNEASQDGN LRQSSGTHDP GNQAFGLRRG RGRPRGGSRT RGGKTNRLDR FPPRKGQQPA  1620
PVGGRKGRFS NRGRWRGART AAKYYVEESE KKEDTEAQED QPEPKEMLGR IEGAENAATS  1680
SGRSEFDEEN VQASGDEYHE VKGGFSGSKS GEFAEGCEIG GERRVQADDN DEEYDNDDDD  1740
GKGSEDLGDG EEYYTRGYEE GNQSHHQQQA QKLDEDEAYS PDSSPDSPSS SEYSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678459469

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085379.1	0.0	homeobox-DDT domain protein RLT2-like
TrEMBL	A0A2G9GES6	0.0	A0A2G9GES6_9LAMI; Uncharacterized protein
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1