PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678459232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CPP | ||||||||
Protein Properties | Length: 816aa MW: 89867.5 Da PI: 6.2776 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.4 | 2.1e-16 | 549 | 586 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 678459232 549 CKRCNCKKSKCLKLYCECFAAGVYCVELCACVDCFNKP 586 79**********************************96 PP | |||||||
2 | TCR | 51.2 | 2.5e-16 | 633 | 671 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 678459232 633 RHKRGCNCKKSGCLKKYCECYQGGVGCSVNCRCEGCKNA 671 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.3E-16 | 547 | 588 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.11 | 548 | 673 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.4E-12 | 550 | 585 | IPR005172 | CRC domain |
SMART | SM01114 | 7.6E-18 | 633 | 674 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.5E-12 | 635 | 671 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MTRQKCWRLR IVEATTISLR PSAKLRFDLV SSQNVHPRYM GFLRISYSLF LGGDEWPADC 60 WYCTFLCFLK FGLMGSSFFF LLNCPGFLIR CGELISSRKL GFNLTLIMVN FDFCCLWKIE 120 SWMPKDSPVF NFLNSLSPIK PVKSIRISQT INPLNLASLP SIFTSPHVNS PRDYKILRRH 180 QLPDPSKPEF ASDHGNKAGE RSVNDDGIKQ MDAQEENPKV TETHGDLAGE TSFDGLQFVV 240 DYSEDPSDNS TSPRPISVLE AVREADIASS STKLISCDTS SPPSVPYASD VVLEGENLIN 300 QNSQVLNCEW DRLLSDSLIF ESPNDRDSYT KSMDPGSSLY IKVEDEINNI QSLCSADSTE 360 QLGEDSEPGP GNEIAEAYID PGEKLDYEVF GLYRGMRRRC LVFEMGGGRK KQLEESLGSE 420 SSSMLHPEGN DFYMDQNPVP TKRESISACR ALPGIGLHLN SLAATSKDYR IISHDSSASG 480 RLLIGPGPSV NFHSSVSNEV HCAVETENAM IPLDDGFQAS EYMETDDTNQ TSPKKKRRRA 540 EASGDVDGCK RCNCKKSKCL KLYCECFAAG VYCVELCACV DCFNKPVHED TVLATRKQIE 600 SRNPLAFAPK VIRGSDQLSE AGDDSSKTPA SARHKRGCNC KKSGCLKKYC ECYQGGVGCS 660 VNCRCEGCKN AFGRKDGMEA DIEDDESMDA TEKLVEKDLD SAAAAAAVPA TPLQGTATRQ 720 ALQQHHLSSK KKPPRGAAAS LSVLGKRSLH PPAKLAQHLE TVKENEMPDV LEESSSPSCV 780 VKSSSPNGKR VSPPHRSSRK LILRSIPSFP SLTQNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-19 | 550 | 670 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 4e-19 | 550 | 670 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 533 | 538 | KKKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678459232 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090684.1 | 0.0 | LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2G9GVD9 | 0.0 | A0A2G9GVD9_9LAMI; Metallothionein-like protein | ||||
STRING | Migut.G00370.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2467 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-130 | Tesmin/TSO1-like CXC domain-containing protein |