PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459084
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32793.8 Da    PI: 6.115
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459084genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1782134456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++++ eq+++Le+ Fe   ++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  678459084  82 KRRLNIEQVKTLEKNFELGTKLEPERKMRLARDLGLQPRQVAIWFQNRRARWK 134
                347889**********************************************9 PP
2HD-ZIP_I/II122.12.8e-3980170191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  e+krrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+ Lkr+++a k+en++L++++++L++e+
    678459084  80 ERKRRLNIEQVKTLEKNFELGTKLEPERKMRLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQLKAAKAENDALQAQNQRLHAEI 170
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1859137IPR009057Homeodomain-like
SuperFamilySSF466892.3E-1874138IPR009057Homeodomain-like
PROSITE profilePS5007116.84476136IPR001356Homeobox domain
SMARTSM003891.1E-1679140IPR001356Homeobox domain
CDDcd000864.04E-1481137No hitNo description
PfamPF000465.3E-1582134IPR001356Homeobox domain
PRINTSPR000312.2E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000312.2E-5116132IPR000047Helix-turn-helix motif
PfamPF021833.1E-11136176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAFFHSNFML QSSHEDEQNL PSTSLASLLS PCAPQEFQGV NSQFWKRSMS FPAGAELCEE  60
MTQNNHGEDE LSDDGSQLGE RKRRLNIEQV KTLEKNFELG TKLEPERKMR LARDLGLQPR  120
QVAIWFQNRR ARWKTKQLEK DYDLLKRQLK AAKAENDALQ AQNQRLHAEI LALKNRETIE  180
SINLNKETEG SSSNRSENSC EVKLETSRNP DIDSPVATVR PALFPSSVMR HNAVEQLFQN  240
PPRPEIHIPT RMDHAVKEES SFCNMLCGVD DQTPFWAWME HPNFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984ERKRRL
2128136RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459084
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071017.11e-138homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-94ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G9GFL11e-135A0A2G9GFL1_9LAMI; Transcription factor HEX
STRINGXP_010242413.11e-124(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.15e-90HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]