PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678458799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22769.2 Da PI: 7.4112 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.4 | 3.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqv fskRr g++KKA+ELS+LCdae+a+i+fs tgklyey++ 678458799 9 KKIDNLTARQVAFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLYEYAT 59 68***********************************************86 PP | |||||||
2 | K-box | 46 | 2.3e-16 | 92 | 164 | 27 | 99 |
K-box 27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e+ + re+++l+Ge+Le+L l++L++Le+q+e++l+++ + ne +l++i++ + e el++en+ L+++ + 678458799 92 ELAERTRELKNLMGEELEELCLNDLMKLEKQVESGLSRVGKAMNEKILNEISRFKSTETELRQENMVLKQQCM 164 444445899************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.128 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-28 | 3 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.43E-34 | 3 | 68 | No hit | No description |
Pfam | PF00319 | 6.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.827 | 79 | 172 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.4E-12 | 88 | 163 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MVRQKIEIKK IDNLTARQVA FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLYEYATS 60 RHDMVSEKWT RLGHENLHLQ MENCDPLTIT KELAERTREL KNLMGEELEE LCLNDLMKLE 120 KQVESGLSRV GKAMNEKILN EISRFKSTET ELRQENMVLK QQCMKVGHGE TSRYQGGGDE 180 ANDISDIALR LCLPFFQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 1 | 70 | 1 | 70 | MEF2C |
5f28_B | 1e-17 | 1 | 70 | 1 | 70 | MEF2C |
5f28_C | 1e-17 | 1 | 70 | 1 | 70 | MEF2C |
5f28_D | 1e-17 | 1 | 70 | 1 | 70 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678458799 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012828389.1 | 1e-68 | PREDICTED: MADS-box protein SVP-like | ||||
Swissprot | Q9FVC1 | 2e-47 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A2G9GMI4 | 1e-69 | A0A2G9GMI4_9LAMI; MADS box transcription factor | ||||
STRING | Migut.B00557.1.p | 6e-68 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 8e-50 | MIKC_MADS family protein |