PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678458595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 163aa MW: 19137.7 Da PI: 6.141 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 95 | 140 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT eE+ +++++ +++G+g+Wk+I+r+ k+R + q+ s+ qky 678458595 95 KPWTVEEHRRFLQGLEKYGKGDWKSISRYALKTRNPTQVASHAQKY 140 58*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.214 | 1 | 54 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.7E-4 | 4 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.83E-9 | 6 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-4 | 7 | 54 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-12 | 89 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.115 | 89 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.38E-17 | 90 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-10 | 93 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-13 | 95 | 140 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.8E-15 | 95 | 144 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.07E-9 | 96 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MEPEESNWTW IEDKVFENSL LEFPEGFPNR WEIIAAMLPE KSPADIERHY IALLIDVTAI 60 DAGMIDLPEY EEMEVPLRQV CQKNPKSGVQ RKGGKPWTVE EHRRFLQGLE KYGKGDWKSI 120 SRYALKTRNP TQVASHAQKY FEHQQKEEAN KKRRSIFYSS IPE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678458595 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095585.1 | 9e-73 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A022QHS1 | 1e-65 | A0A022QHS1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.M01627.1.p | 2e-66 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14988 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-44 | MYB family protein |