PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678458536

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 406aa MW: 45737.4 Da PI: 6.926

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678458536	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	394.6	1e-120	34	405	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilkfshl 96 +++lL++cAe+v+ +d ++aq+lL+ ls +sp gd+++Rl++ f++AL+ r ++ + ++++ ++++ s+e a+++ +++v+P+++f++l 678458536 34 MRHLLVSCAEVVARSDYAAAQRLLSVLSSGCSPCGDSTERLVHQFARALRLRCSGGIGGFRVSVNAGGSTSRGCSDEDAVVQSsylsLNQVTPFIRFCQL 133 689**************************************************77777777777776666533333333333556********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledlelee 193 taNqaIlea++g + +Hi+Dfdi++G+QWp+L+qaLa+R ++p+lRiTg g + e l++tg+rLakfA++lg++f+f++l + ++ ++ ++ 678458536 134 TANQAILEAIDGRQSIHILDFDIMHGVQWPPLMQALADR-YPTPTLRITGSGG----ELEILRRTGDRLAKFAHSLGLRFQFHPLillAGEDPVSVIASS 228 **********************************9.899******....99*********************9443222333445778 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 + p+E+laVn+ + lhrll ++ +l+ +L+ +ks+sP +v v+e+ea+hn++ F +rf+eal++y+a+fdslea+lp++s+er vE++++g+e 678458536 229 VVILPEETLAVNFNHYLHRLLTDRDHLH----LFLRRIKSMSPIIVAVAEREANHNHPIFQHRFIEALNHYAAVFDSLEATLPPNSRERFAVEQMWFGKE 324 88889************5555555....5*************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 i+++va+eg+ rrerhe++++W +++++GF++v+ls +a++qaklllr ++ s+gy+++ ++sl+lgW+++pL+svS+W 678458536 325 ICDIVAAEGEFRRERHERFRSWDLMMRSSGFTNVQLSPFAVSQAKLLLRLHYpSEGYQLHIFNNSLCLGWQNQPLYSVSSW 405 ******************************************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.503	8	385	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-118	34	405	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MLGEEQEELM PLPLPPPQLQ LQLHVEPQPP LGQMRHLLVS CAEVVARSDY AAAQRLLSVL 60 SSGCSPCGDS TERLVHQFAR ALRLRCSGGI GGFRVSVNAG GSTSRGCSDE DAVVQSSYLS 120 LNQVTPFIRF CQLTANQAIL EAIDGRQSIH ILDFDIMHGV QWPPLMQALA DRYPTPTLRI 180 TGSGGELEIL RRTGDRLAKF AHSLGLRFQF HPLILLAGED PVSVIASSVV ILPEETLAVN 240 FNHYLHRLLT DRDHLHLFLR RIKSMSPIIV AVAEREANHN HPIFQHRFIE ALNHYAAVFD 300 SLEATLPPNS RERFAVEQMW FGKEICDIVA AEGEFRRERH ERFRSWDLMM RSSGFTNVQL 360 SPFAVSQAKL LLRLHYPSEG YQLHIFNNSL CLGWQNQPLY SVSSWH

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MLGEEQEELM PLPLPPPQLQ LQLHVEPQPP LGQMRHLLVS CAEVVARSDY AAAQRLLSVL  60
SSGCSPCGDS TERLVHQFAR ALRLRCSGGI GGFRVSVNAG GSTSRGCSDE DAVVQSSYLS  120
LNQVTPFIRF CQLTANQAIL EAIDGRQSIH ILDFDIMHGV QWPPLMQALA DRYPTPTLRI  180
TGSGGELEIL RRTGDRLAKF AHSLGLRFQF HPLILLAGED PVSVIASSVV ILPEETLAVN  240
FNHYLHRLLT DRDHLHLFLR RIKSMSPIIV AVAEREANHN HPIFQHRFIE ALNHYAAVFD  300
SLEATLPPNS RERFAVEQMW FGKEICDIVA AEGEFRRERH ERFRSWDLMM RSSGFTNVQL  360
SPFAVSQAKL LLRLHYPSEG YQLHIFNNSL CLGWQNQPLY SVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-59	41	405	25	377	Protein SCARECROW
5b3h_D	1e-59	41	405	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678458536

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095666.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-120	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	S8CCG3	0.0	S8CCG3_9LAMI; Lateral suppressor protein (Fragment)
STRING	XP_009765072.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-107	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]