PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678458376

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SRS

Protein Properties

Length: 330aa MW: 34237.1 Da PI: 7.6593

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678458376	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	203.5	5.8e-63	118	257	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqq+ a+++ + kr+re+ + +++l++t++++++ let 678458376 118 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQQPEAAATP------PSGKRPRET-PAISNSLACTRIPTSS---GLET 207 5789********************************************99998875555......457888886.8888999999999874...7899 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P+ev ++avfrcvrvs+vd+ +++aYq+av+i Gh+fkGiLydqG+e+ 678458376 208 GDFPSEVTAPAVFRCVRVSAVDE--DQFAYQAAVNIRGHLFKGILYDQGTEA 257 9****************96..79********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-58	120	256	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-27	122	164	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.9E-23	210	254	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAGFFTLGAA AAGGGATDQP PSSEIHPENW FLLRNEESVV PVSVPVPVPV PYRGFELWQQ 60 QQQQQQGPGQ GENNPLQELY ASAGVLAVGP SRGGGGLGDG SRSGFLMMRS GAASASGGGG 120 ISCQDCGNQA KKDCAHMRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQQQ QPEAAATPPS 180 GKRPRETPAI SNSLACTRIP TSSGLETGDF PSEVTAPAVF RCVRVSAVDE DQFAYQAAVN 240 IRGHLFKGIL YDQGTEAQYL AASAAGDTSS GGGSISAGGQ PLNLITGTSA AATPSAPTGG 300 TALPLLDPSF YPAPINSFMA GTQFFPQSRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678458376

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100954.1	1e-115	protein SHORT INTERNODES
Swissprot	K4B6C9	1e-91	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2G9HGI3	1e-112	A0A2G9HGI3_9LAMI; Uncharacterized protein
STRING	EOX90942	1e-104	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	5e-58	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]