PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678458266
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 335aa    MW: 38123.2 Da    PI: 4.9454
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678458266genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-19181233456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + ++++eqle Le+ F+++ +++ +++ +L+k lgL  rq+ vWFqNrRa++k
  678458266 181 KKRLSNEQLESLENSFQEEIKLDPDRKMKLSKDLGLHPRQIAVWFQNRRARWK 233
                5569************************************************9 PP
2HD-ZIP_I/II120.11.1e-38180270292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rls+eq+++LE+sF+ee kL+p+rK++l+++Lgl+prq+avWFqnrRAR+k+kqlE+ y+aLk+++da+++e++rL++ev +Lr+ lk
    678458266 180 KKKRLSNEQLESLENSFQEEIKLDPDRKMKLSKDLGLHPRQIAVWFQNRRARWKSKQLESLYDALKQEFDAVSREKQRLQQEVMALRAILK 270
                  9**************************************************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-18168237IPR009057Homeodomain-like
PROSITE profilePS5007116.52175235IPR001356Homeobox domain
SMARTSM003893.9E-18178239IPR001356Homeobox domain
CDDcd000866.43E-16180236No hitNo description
PfamPF000462.3E-16181233IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-20182242IPR009057Homeodomain-like
PROSITE patternPS000270210233IPR017970Homeobox, conserved site
PfamPF021833.9E-8235269IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRCATFSDDP QEDNEVYLKN DEEFAQVNTL ETKIIPPESI TRSKSKMLED TLKVLLNTIG  60
IKHGLENILS KEFTFSATTM FILSLSDLCC DLCCIARRKL LEVASMDWNN ESYNRVPGLS  120
FISRPENSLG FLYNCTYDQF PEEVKQQHQA SISAAGQMLP STFMGKSNVG CINLYGQDPK  180
KKRLSNEQLE SLENSFQEEI KLDPDRKMKL SKDLGLHPRQ IAVWFQNRRA RWKSKQLESL  240
YDALKQEFDA VSREKQRLQQ EVMALRAILK DHIAGKQISA GYTDMSGEET VESTSIPSSG  300
VPNQVSECND NNLINVEDYS NTMMITTPYN WAALP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227235RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678458266
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.11e-100putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8CB321e-101S8CB32_9LAMI; Uncharacterized protein
STRINGMigut.J00491.1.p9e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-49homeobox 51