PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678457765

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 690aa MW: 74481.5 Da PI: 4.9756

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678457765	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	416.9	1.7e-127	312	667	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lLl+cAeavs ++le+a+++L ++s+la+p g++ qR+aayf eA++ar+++s+ ++y++lp+ + s + +a+++f+ +sP++kfsh+taNqa 678457765 312 LTLLLQCAEAVSGDNLEEANKILLEISQLATPFGTSAQRVAAYFSEAMSARIVSSCLGMYSSLPAVPHS----HKLSSAFQIFNGISPFIKFSHFTANQA 407 579***********************************************************99996....7888999**************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 I ea+ege+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+ ske+le+tg+rL++fAe+lg+pfef + + +++ +l++++L+++++Ea 678457765 408 IQEAFEGESRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SKEALEATGKRLSDFAERLGLPFEFFP-LPEKVGNLDPDKLSLSKREA 502 ********************************************....***********************.599************* PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +aV++ h+l+d ++s ++ +L+++++lsPkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll+rei+n++a 678457765 503 VAVHWLQ--HSLYDVTGSDAN----TLWFLQRLSPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSREIRNLLAVG 595 **9..999999999999....******************.899********************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g +r + + + +Wre+le++GF++v+ls +aa+qa lll +++sdgy++ e++g+l lgWkd L+++SaWr 678457765 596 GPARSGEVK-FDNWREKLEQSGFRSVSLSGNAAAQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 667 888776.*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.53	285	647	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.0E-125	312	667	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MVRKRSAGEM MEIVEIPAAG EDRFPRRSAL LYGSCSDSNP NAAMTSQQSV PVTTNFSPMV 60 SPPSANFDVL MAAANSGSGS GVGDSSPVVL ENSGGTPPSM CVFSGLPLFP PERNTGLQLL 120 SPTTSYSTVD DDRTAWVDAV IKDLVQSSNN GVSIPQLILN VRDIIHPCNP NLPNLLEQRL 180 RALSNGPLKD TLPPVSFLRQ QESNNNLLIP PPPEQLSQWP PQPPPTQGIV ITPTSSSAAA 240 TALPSFLPPL TVLPTPRPPA AAETAEKSVS PEALTTAPPP PTVAAGPFPE PVRQKKEEIR 300 HQQRDEEGLH LLTLLLQCAE AVSGDNLEEA NKILLEISQL ATPFGTSAQR VAAYFSEAMS 360 ARIVSSCLGM YSSLPAVPHS HKLSSAFQIF NGISPFIKFS HFTANQAIQE AFEGESRVHI 420 IDLDIMQGLQ WPGLFHILAS RPGGPPFVRL TGLGNSKEAL EATGKRLSDF AERLGLPFEF 480 FPLPEKVGNL DPDKLSLSKR EAVAVHWLQH SLYDVTGSDA NTLWFLQRLS PKVVTVVEQD 540 LSHAGSFLGR FVEAIHYYSA LFDSLGACYG EESEERHVVE QQLLSREIRN LLAVGGPARS 600 GEVKFDNWRE KLEQSGFRSV SLSGNAAAQA TLLLGMFPSD GYTLVEDNGT LKLGWKDLCL 660 LTASAWRPPA GELIRSLLIT DGWSSGDISV

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MVRKRSAGEM MEIVEIPAAG EDRFPRRSAL LYGSCSDSNP NAAMTSQQSV PVTTNFSPMV  60
SPPSANFDVL MAAANSGSGS GVGDSSPVVL ENSGGTPPSM CVFSGLPLFP PERNTGLQLL  120
SPTTSYSTVD DDRTAWVDAV IKDLVQSSNN GVSIPQLILN VRDIIHPCNP NLPNLLEQRL  180
RALSNGPLKD TLPPVSFLRQ QESNNNLLIP PPPEQLSQWP PQPPPTQGIV ITPTSSSAAA  240
TALPSFLPPL TVLPTPRPPA AAETAEKSVS PEALTTAPPP PTVAAGPFPE PVRQKKEEIR  300
HQQRDEEGLH LLTLLLQCAE AVSGDNLEEA NKILLEISQL ATPFGTSAQR VAAYFSEAMS  360
ARIVSSCLGM YSSLPAVPHS HKLSSAFQIF NGISPFIKFS HFTANQAIQE AFEGESRVHI  420
IDLDIMQGLQ WPGLFHILAS RPGGPPFVRL TGLGNSKEAL EATGKRLSDF AERLGLPFEF  480
FPLPEKVGNL DPDKLSLSKR EAVAVHWLQH SLYDVTGSDA NTLWFLQRLS PKVVTVVEQD  540
LSHAGSFLGR FVEAIHYYSA LFDSLGACYG EESEERHVVE QQLLSREIRN LLAVGGPARS  600
GEVKFDNWRE KLEQSGFRSV SLSGNAAAQA TLLLGMFPSD GYTLVEDNGT LKLGWKDLCL  660
LTASAWRPPA GELIRSLLIT DGWSSGDISV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	295	668	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678457765

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101980.1	0.0	protein SCARECROW
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A2G9G7V0	0.0	A0A2G9G7V0_9LAMI; Uncharacterized protein
STRING	cassava4.1_001737m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8258	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein