PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678457731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 229aa MW: 25696.8 Da PI: 9.3514 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 29 | 2.3e-09 | 131 | 211 | 18 | 99 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P+ r+k i+k de ++s ea l+ ka e f+ +t ++l a +++ ++ +v++ + f fl d vp+ 678457731 131 ACRFPMNRVKLIIK-DEIPDRVSQEAVFLINKATEKFLQLFTKEAYLSASLDQKHHTAYDHLSFVVSKGKRFSFLSDFVPER 211 4679*********9.566689*****************************9999999999*******************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 8.6E-11 | 133 | 195 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-16 | 134 | 210 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.51E-13 | 150 | 210 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MAKRRRVAAA KSRNQKNRKR SKNLSAIESP PPKAKATNRG RKLKALPTST AAGDSSEELE 60 DDAAQLSGPK SQEEDVSDEN EGSMSGGDEE KRPLKSAKGK GKEDVRNKGR KRIMKEEDDD 120 DDDEERGENL ACRFPMNRVK LIIKDEIPDR VSQEAVFLIN KATEKFLQLF TKEAYLSASL 180 DQKHHTAYDH LSFVVSKGKR FSFLSDFVPE RMKAEEALAQ ISEVEKSQA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 6 | KRRRV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678457731 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089889.1 | 2e-37 | protein MNN4 isoform X1 | ||||
TrEMBL | A0A2G9IAE2 | 1e-42 | A0A2G9IAE2_9LAMI; DNA-directed DNA polymerase | ||||
STRING | POPTR_0009s01750.1 | 3e-30 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9304 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 8e-25 | nuclear factor Y, subunit C10 |