PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678456998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 21656.8 Da PI: 7.8406 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H 678456998 87 YKCTVCDKAFSSYQALGGHKASH 109 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 16.9 | 1.8e-05 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ CgksF++ L H r+H 678456998 137 HECSVCGKSFPTGQALGGHKRKH 159 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 8.2E-13 | 87 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.905 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0078 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 87 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.41E-9 | 87 | 159 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 135 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.4E-13 | 137 | 161 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.45 | 137 | 159 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MALDALNSTA LPTSTKITRR LEDIGAWTES DRSKRHRGGG GGGVCDSSMT EEEYLAFCLI 60 MLARGGGGAD AVYSSATPSA PVDGGGYKCT VCDKAFSSYQ ALGGHKASHR SRPPVASSPS 120 GESTAVNDSS NPIGRIHECS VCGKSFPTGQ ALGGHKRKHY EGVIGGAKSR TSSSTGNQPS 180 VPRSFDLNRP ASPDPQGEEA AESGDTLPKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678456998 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088065.1 | 1e-53 | zinc finger protein AZF2-like | ||||
TrEMBL | A0A4D8YBY4 | 4e-49 | A0A4D8YBY4_SALSN; Transcription initiation factor TFIIA small subunit | ||||
TrEMBL | A0A4D9BGD6 | 1e-49 | A0A4D9BGD6_SALSN; Uncharacterized protein | ||||
STRING | Gorai.002G132600.1 | 1e-44 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43170.1 | 2e-41 | zinc-finger protein 3 |