PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456866
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 236aa    MW: 27141.4 Da    PI: 8.5876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456866genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.1e-2083135456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + ++++eqle Le+ F+++ +++ +++ +L+k lgL  rq+ vWFqNrRa++k
  678456866  83 KKRLSNEQLESLENSFQEETKLDPDRKMKLSKDLGLHPRQIAVWFQNRRARWK 135
                45699***********************************************9 PP
2HD-ZIP_I/II119.81.5e-3882172292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rls+eq+++LE+sF+ee+kL+p+rK++l+++Lgl+prq+avWFqnrRAR+k+kqlE+ y+aLk+++da+++e+++L+kev +Lr+ l+
    678456866  82 KKKRLSNEQLESLENSFQEETKLDPDRKMKLSKDLGLHPRQIAVWFQNRRARWKSKQLESLYDALKQEFDAVSREKQKLQKEVMALRAILA 172
                  9*************************************************************************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1872139IPR009057Homeodomain-like
PROSITE profilePS5007116.77977137IPR001356Homeobox domain
SMARTSM003891.6E-1879141IPR001356Homeobox domain
CDDcd000862.52E-1682138No hitNo description
PfamPF000464.7E-1783135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-2184144IPR009057Homeodomain-like
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PfamPF021831.0E-8137171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEWNNESYNK VAGLGFASQP EISMPSIYNY SYDQFPEEIK QQQQQQQPQA WISAAASGQM  60
LPSTFLRKNN VGCNNIYGQE LKKKRLSNEQ LESLENSFQE ETKLDPDRKM KLSKDLGLHP  120
RQIAVWFQNR RARWKSKQLE SLYDALKQEF DAVSREKQKL QKEVMALRAI LAKNQISPGY  180
TNISGEETVE STSARSSDNQ ASERKDGNSK NNYINVLDYC NPMMVTTPPY NWAALP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456866
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.13e-79putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8CB321e-79S8CB32_9LAMI; Uncharacterized protein
STRINGMigut.J00491.1.p3e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-49homeobox 51