PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456732
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 519aa    MW: 56843.1 Da    PI: 7.2489
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456732genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.5e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +++++G g W+tI +          R+  ++k++w+++
        678456732  5 KQKWTSEEEAALKAGIQRYGVGKWSTILKDPEfnvilRSRSNVDLKDKWRNL 56
                     79************************************************97 PP
2DUF26087.12.3e-27334435197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++Ckvlr++C++ Cvl+p++     +++q ++  +v+k+FG++ ++++++a+pe++r+ +++sl++eA  r+ +Pv+Ga+g++ +++++++++++e +
  678456732 334 SCNGCKVLRKGCSETCVLRPCLqwiqgAEAQGNAIVFVAKFFGRAALMNFISAVPENQRPLLFRSLLFEAVGRTVNPVNGALGLMETGNWHVCHAAVENV 433
                6*********************9999878889***************************************************************99987 PP

     DUF260  96 ll 97 
                l+
  678456732 434 LR 435
                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.237161IPR017930Myb domain
SuperFamilySSF466892.89E-15267IPR009057Homeodomain-like
SMARTSM007171.4E-5459IPR001005SANT/Myb domain
PfamPF002493.2E-7556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-14556IPR009057Homeodomain-like
CDDcd116602.54E-21657No hitNo description
PROSITE profilePS5150419.527125193IPR005818Linker histone H1/H5, domain H15
SMARTSM005263.6E-9125188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.14E-12128195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-13129193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.2E-8130186IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5089118.626333439IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-23334432IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI QRYGVGKWST ILKDPEFNVI LRSRSNVDLK DKWRNLNCIA  60
SGMGSRHRAS VAYKKSQLSV SKHDADAAEG DVLEADKDPM IVDGHSILLL SNACVIMYLL  120
SKVFPDDRLD DVIMEAIAKL KEPRGSSRHT ITEYIEGLYI APPEFEKMLS TRLKILTENG  180
QLIKVKHQYR IAPMSTMWNA PKELPSFLSN GAKTKDPSHV RNTGVVLLTK EQVDADLEKM  240
KYMSPQEAAA FAAQAVAEAE AAVAAAEAAL KEAEEAEADA ESARCFVNAM RKSVPGNNNM  300
GIICLSEFLH SIAGSRFSAG ILDRILVVFI FSMSCNGCKV LRKGCSETCV LRPCLQWIQG  360
AEAQGNAIVF VAKFFGRAAL MNFISAVPEN QRPLLFRSLL FEAVGRTVNP VNGALGLMET  420
GNWHVCHAAV ENVLRAGALK RMREVAADNN NPDDDSDCTD IYRENRFGGL QEPELWLSPG  480
GGHPSLRRVG STSMNSEASV ITNCGYPTPQ GGRLLNLFH
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456732
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099387.13e-86telomere repeat-binding factor 1 isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.14e-57LOB domain-containing protein 39