PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678456464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29006.2 Da PI: 8.9043 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1e-10 | 37 | 83 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+eE +++ +a +++ ++ +W +a++ + g+t +++++++ + 678456464 37 KWTPEENKRFENALALYDKDtpdRWYNVASMTP-GKTVHDVINHYREL 83 8********************************.***********975 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 135 | 179 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky 678456464 135 PWTEEEHRQFLLGLRKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.622 | 33 | 88 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-5 | 33 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-10 | 34 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.31E-13 | 36 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-9 | 37 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-7 | 37 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-13 | 125 | 183 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.045 | 128 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.09E-17 | 130 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-18 | 131 | 183 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.7E-13 | 132 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-10 | 135 | 180 | No hit | No description |
Pfam | PF00249 | 3.6E-12 | 135 | 179 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MNRGVGVVPS APSAHHSSSS ASSSNWLFFD QSSRFSKWTP EENKRFENAL ALYDKDTPDR 60 WYNVASMTPG KTVHDVINHY RELVEDITDI ESGAIPIPGY INNSFTLEWV SEKGGLKQRK 120 PSSRCSEHER KKGVPWTEEE HRQFLLGLRK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF 180 IRQVAGGKDK KRSSIHDITM VSIEEPKAPE KTTTTASDDS KGKMTNHLHP HSSTEFSMNL 240 ELDSDAGLGQ HPAMYSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-19 | 38 | 100 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678456464 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094978.1 | 1e-108 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-79 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2G9I5K7 | 1e-104 | A0A2G9I5K7_9LAMI; Zuotin | ||||
STRING | POPTR_0006s09860.1 | 1e-100 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 6e-95 | MYB family protein |
Publications ? help Back to Top | |||
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