PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456448
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 343aa    MW: 38072.9 Da    PI: 9.4186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456448genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-1865117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 
                      +g+WT+eEd llv +v+q+G g+W+t+++  g     + R+ k+c++rw +yl
        678456448  65 KGPWTPEEDILLVSYVQQHGAGNWRTVPSNAGelvvgLLRCSKSCRLRWTNYL 117
                      79*************************************************97 PP
2Myb_DNA-binding48.32.3e-15123168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ ++++ ++lG++ W++Ia +++  Rt++++k++w+++l
        678456448 123 RGNFSKQEEKTIIHLQALLGNR-WAAIATYLP-QRTDNDIKNYWNTHL 168
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.51160117IPR017930Myb domain
SuperFamilySSF466891.28E-2961164IPR009057Homeodomain-like
SMARTSM007175.7E-1464119IPR001005SANT/Myb domain
PfamPF002492.7E-1665117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2266124IPR009057Homeodomain-like
CDDcd001672.73E-1167117No hitNo description
PROSITE profilePS5129424.016118172IPR017930Myb domain
SMARTSM007172.0E-14122170IPR001005SANT/Myb domain
PfamPF002491.3E-14123168IPR001005SANT/Myb domain
CDDcd001671.19E-10125168No hitNo description
Gene3DG3DSA:1.10.10.601.4E-23125172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MCATGDSNID PPDLRPNLHS LPDSSLKHFC KVFILYLPLR SQESSERLAG MRGRPPCFEK  60
MGVKKGPWTP EEDILLVSYV QQHGAGNWRT VPSNAGELVV GLLRCSKSCR LRWTNYLRPG  120
IRRGNFSKQE EKTIIHLQAL LGNRWAAIAT YLPQRTDNDI KNYWNTHLKK KVAKGCRNQL  180
ADGRSFESSS SGSKGLWERR LQTDIQTAKR DLLQALGLVK SGEENSSSLP QMTNPPPTPS  240
SYASNADNIA RLLVNWMKKP DPAAQRCSTD GANRSTSSPD ETKSSSEGDG VKRGAGNAGP  300
RHDRDQTQMP LTVFDKWLIE NGASQGQFGD LIDMTMSETA DLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23651727108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456448
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071639.11e-107myb-related protein 306
SwissprotP813926e-92MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2G9GNJ71e-106A0A2G9GNJ7_9LAMI; Transcription factor, Myb superfamily
STRINGVIT_17s0000g06190.t011e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.15e-84myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]