PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456285
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25093.4 Da    PI: 5.1592
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456285genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12.1e-2072124456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + ++++eqle Le++F+++ +++ +++ +LAk+lg++ rq+ +WFqNrRa++k
  678456285  72 KKRLSTEQLESLENCFQEEVKLDPDRKMKLAKELGMQPRQIAIWFQNRRARWK 124
                45699***********************************************9 PP
2HD-ZIP_I/II117.48e-3871161292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rls+eq+++LE++F+ee kL+p+rK++la+eLg+qprq+a+WFqnrRAR+k+kqlE+ y+aLk++++a++ e+++L++ev +Lr+ lk
    678456285  71 KKKRLSTEQLESLENCFQEEVKLDPDRKMKLAKELGMQPRQIAIWFQNRRARWKAKQLENLYDALKQELEAVTGEKQQLQQEVMALRALLK 161
                  9**************************************************************************************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1958128IPR009057Homeodomain-like
PROSITE profilePS5007116.47166126IPR001356Homeobox domain
SMARTSM003891.1E-1768130IPR001356Homeobox domain
CDDcd000861.39E-1771127No hitNo description
PfamPF000461.6E-1772124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-2173133IPR009057Homeodomain-like
PRINTSPR000311.2E-597106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5106122IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MASMDWNNEG YRLASLGSRP ETSFGFLCNY NYDHPFPGLE MKPQSLSATQ ILPSLTGKSV  60
GFSNTYGQDL KKKRLSTEQL ESLENCFQEE VKLDPDRKMK LAKELGMQPR QIAIWFQNRR  120
ARWKAKQLEN LYDALKQELE AVTGEKQQLQ QEVMALRALL KDQVGKKTQL SPGEETVESR  180
SIVNPEGDAP PLTNDGNYIM NVDDYSNPAA IMTPYNWPAL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARWKAKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456285
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.15e-84putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8CB322e-86S8CB32_9LAMI; Uncharacterized protein
STRINGMigut.J00491.1.p2e-75(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-50homeobox 51