PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678456219
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 267aa    MW: 29442.3 Da    PI: 5.9575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678456219genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS138.85.6e-43412592208
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse.lykalppsetsekn....sseelaalkl..fsevsPilkfs 94 
                ++lL++cA a++s+d++l q++L+ l+++a+ dgd++qRl+  f++AL +r ++++++ l  a++  +  ++n    + +++++ +l  f++++P+++f+
  678456219  41 EQLLVHCAAAIESNDATLSQQILWVLNNIAAADGDSNQRLTWGFLRALITRATKTGNTkLLTAVAHLHP-DNNlpiiHNHRFSIIELasFVDLTPWHRFG 139
                79****************************************************555404444444444.4445777555555555577*********** PP

       GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrled 188
                + +aN+a+ eaveg   vHi+D+++++++Q p+L++a+asR +  p +++T+ g  e++      ++ e+g++L +fA + ++ +ef+++    ++ +++
  678456219 140 FTAANSALIEAVEGYPVVHIVDISLTHCMQIPTLIDAIASRLKILPVIKLTVAGTIEEFppfPDFTYDELGSKLVNFAMSKNLVLEFRTVpctCSDGFSA 239
                *******************************************************99999999**************************98844556666 PP

       GRAS 189 leleeLrvkp.gEalaVnlvl 208
                l +e+L++ + ++++ ++l +
  678456219 240 L-IEQLQLPQgDDNVCIHLLV 259
                6.9****99977888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.57114267IPR005202Transcription factor GRAS
PfamPF035141.9E-4041259IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MPQVPLCSLV IVIAFLCSFV TVVVVNHAIS LFFNSDANCM EQLLVHCAAA IESNDATLSQ  60
QILWVLNNIA AADGDSNQRL TWGFLRALIT RATKTGNTKL LTAVAHLHPD NNLPIIHNHR  120
FSIIELASFV DLTPWHRFGF TAANSALIEA VEGYPVVHIV DISLTHCMQI PTLIDAIASR  180
LKILPVIKLT VAGTIEEFPP FPDFTYDELG SKLVNFAMSK NLVLEFRTVP CTCSDGFSAL  240
IEQLQLPQGD DNVCIHLLVF VTLPQRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-253022677272Protein SHORT-ROOT
5b3h_B3e-253022623218Protein SHORT-ROOT
5b3h_E3e-253022623218Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678456219
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074095.11e-104scarecrow-like protein 32
SwissprotQ9SN224e-86SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A022RWR11e-108A0A022RWR1_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.H00362.1.p1e-109(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-88GRAS family protein