PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678456216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 157aa MW: 18350 Da PI: 5.7459 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 132 | 6.8e-41 | 3 | 153 | 223 | 373 |
GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 rd +Lk+v++l+P+vv vv+++ad +s ++++r++ a +y + +d++e+ lp+ ++ r ++E+ + ++i+nvv++eg++r+er et++kW +r++++ 678456216 3 LRDMFLKAVRTLNPTVVMVVDEDADFTSINLVNRLIAAYNYLWIPYDTMETFLPNGNKSREWYEAD-IYWKIENVVSQEGRQRVERAETKSKWVQRMRNV 101 5899**************************************************************.********************************* PP GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 GF+ v++se+a ++k++l +++ ++g + ee+++ lvl+Wk++++++++aW 678456216 102 GFRGVAFSEEAIGEVKRMLDEHApVWGLKKEEDEQHLVLTWKGHNVIFATAW 153 **************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.164 | 1 | 133 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-38 | 3 | 153 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MSLRDMFLKA VRTLNPTVVM VVDEDADFTS INLVNRLIAA YNYLWIPYDT METFLPNGNK 60 SREWYEADIY WKIENVVSQE GRQRVERAET KSKWVQRMRN VGFRGVAFSE EAIGEVKRML 120 DEHAPVWGLK KEEDEQHLVL TWKGHNVIFA TAWVPAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 8e-15 | 2 | 155 | 313 | 474 | Protein SHORT-ROOT |
5b3h_B | 6e-15 | 2 | 155 | 259 | 420 | Protein SHORT-ROOT |
5b3h_E | 6e-15 | 2 | 155 | 259 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678456216 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016697295.1 | 3e-82 | PREDICTED: scarecrow-like protein 32 isoform X2 | ||||
Swissprot | Q9SN22 | 3e-62 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A2G9HJF6 | 2e-81 | A0A2G9HJF6_9LAMI; Uncharacterized protein | ||||
STRING | Gorai.007G221900.1 | 2e-81 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8781 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-64 | GRAS family protein |