PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678455683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28954.7 Da PI: 8.47 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 121 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + k r++lg+++ta eAa+a+++a+ +l+g 678455683 121 HYRGVRKRP-WGKFAAEIRDP---NkKGSRVWLGTYDTAVEAARAYDRAAFRLRG 171 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 120 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.73E-31 | 121 | 179 | No hit | No description |
SMART | SM00380 | 3.1E-39 | 121 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.566 | 121 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-14 | 121 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-23 | 121 | 181 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-13 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 161 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGAFFDETSQ LEMIRQHLLL DDISFIDNYG DKSCCFLLES QLSADSNSLV SDLTMISSPA 60 SVDTPASGSS SSSSSSRLMD FSFESGLLEF ETKPIRKKPC LTVAVPANKA KVVTDSNDRR 120 HYRGVRKRPW GKFAAEIRDP NKKGSRVWLG TYDTAVEAAR AYDRAAFRLR GSKAILNFPL 180 EIGNSNRNEP FTATVAVVET SRKRMRDSEV AARPVKIETD ETEVPLTPSS WMAVWDSFNG 240 NGIFEIPPLS PPSSPRKVPR H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 120 | 182 | 4 | 66 | ATERF1 |
3gcc_A | 4e-30 | 120 | 182 | 4 | 66 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678455683 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022872923.1 | 5e-64 | ethylene-responsive transcription factor 5-like | ||||
TrEMBL | X2BY49 | 5e-64 | X2BY49_PANQU; Transcription factor ERF1 | ||||
STRING | Migut.F00527.1.p | 3e-61 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-40 | ERF family protein |