PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455291
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 272aa    MW: 31166.5 Da    PI: 4.9016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455291genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd++l+d+++ +G g+W++ ++  g+ R++k+c++rw++yl
        678455291 15 RGKWSEEEDKKLIDYIRVHGEGRWRLLPSGAGLMRCGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding55.11.7e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eEd+++ +++k +G++ W+ Ia++++ gRt++++k++w+++l
        678455291  68 RGKFTEEEDDIISQLHKFMGSK-WSVIAKHLP-GRTDNDIKNYWNSHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1261062IPR017930Myb domain
SuperFamilySSF466894.23E-2912109IPR009057Homeodomain-like
SMARTSM007171.6E-121464IPR001005SANT/Myb domain
PfamPF002491.1E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-221668IPR009057Homeodomain-like
CDDcd001677.61E-111762No hitNo description
PROSITE profilePS5129425.27763117IPR017930Myb domain
SMARTSM007171.1E-1667115IPR001005SANT/Myb domain
PfamPF002494.0E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2569116IPR009057Homeodomain-like
CDDcd001673.11E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGKTPCCSNK AGLKRGKWSE EEDKKLIDYI RVHGEGRWRL LPSGAGLMRC GKSCRLRWLN  60
YLRSDKKRGK FTEEEDDIIS QLHKFMGSKW SVIAKHLPGR TDNDIKNYWN SHLSRKQWRY  120
LPRRMPSHTH HHHQEEEEEE EGILAIEGTS FEDFLSGLDS PLQPVEGNEA PLMSAQTDRD  180
RLFPENAAAG GGEQNVKDDA SSSSNLESIT VSQNEDLEFV CKFGFLSPFQ TFFDGEGVAG  240
EEDDDEEELL ELWSNEDTQT RSDSPKIPKR EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26131165107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455291
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.14e-56myb domain protein 74