PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455060
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 325aa    MW: 37063.8 Da    PI: 8.7021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455060genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-12108150246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      gr+  eEd  +  + ++ G++ W++Ia++++ gRt++++k++w++
        678455060 108 GRFCDEEDGVICSLYARIGSR-WSAIASHLP-GRTDNDIKNHWNT 150
                      678899***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-1177113IPR009057Homeodomain-like
PROSITE profilePS500905.62277101IPR017877Myb-like domain
SuperFamilySSF466891.17E-2185156IPR009057Homeodomain-like
PROSITE profilePS5129419.303102156IPR017930Myb domain
SMARTSM007177.4E-9106154IPR001005SANT/Myb domain
PfamPF002492.1E-10108150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-17114153IPR009057Homeodomain-like
CDDcd001675.12E-7128152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSFRAIKYVS LWPNDWCSFY LSTQKQVRVD DTTHVHVVVG KRRSYLKGWE AEKTYKKTKK  60
KKKKTKKRDC FEGNVWKWEE LLVVIRQRCG KSCRLRWLNY LRPNIKHGRF CDEEDGVICS  120
LYARIGSRWS AIASHLPGRT DNDIKNHWNT KLKKKFFMGA SNSHGRSSSC QASSIIDNNH  180
HHFPSLSTIN LITPSPCMPQ TPSFCDDSIE PFPILFNQLQ DSTTTFTESY FPPFHRNDED  240
VCRSNILICG AEGAVTSSPN GSCITNQMGN NRDSQSFMIG DNAYGFSSSD AGFHRNNPTP  300
FDGIHEITEL ICGDNLGSFV DYLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-20491557104C-Myb DNA-Binding Domain
1msf_C5e-20491557104C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14062KRRSYLKGWEAEKTYKKTKKKKK
25866KKKKKKTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-36myb domain protein 87