PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678454909 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 36448.5 Da PI: 7.3139 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 178 | 226 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a++ a+ kl+g 678454909 178 FRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDTAAYKLRG 226 8******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.51E-32 | 176 | 234 | No hit | No description |
PROSITE profile | PS51032 | 23.182 | 177 | 234 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-36 | 177 | 240 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-22 | 177 | 235 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-31 | 177 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 178 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 178 | 226 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-11 | 200 | 216 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MRVPRDWIQL ECSKWALNSR NFWSENLLLG FIKKAIAMGL LFFILGPPPA APVVILSDFS 60 CWFHSRALIA SVRFFLVYVS GLRAREIRQK SLQRTLQALE PFMETSASNT TCDDFWSESE 120 SLAFSGVFSN QFTPSQVVES KAQFRPQKEN PNQGCSLRGP RAVTMKNHEK APKPMKLFRG 180 VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDTA AYKLRGDLAM LNFPLFQQHL 240 SQSTDFNPLS SSVDAKLQAI CQQQQQQQQQ QEGSSEGPSL CSETVKVEQQ PGDYPEPDIS 300 FLSLILENCP SFEIDWELCD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 176 | 235 | 4 | 64 | ATERF1 |
3gcc_A | 2e-21 | 176 | 235 | 4 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678454909 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019177314.1 | 1e-54 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | O65665 | 8e-45 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A2I0JTD5 | 6e-53 | A0A2I0JTD5_PUNGR; Uncharacterized protein | ||||
STRING | XP_004514265.1 | 4e-49 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65130.1 | 6e-35 | ERF family protein |