PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678454674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SRS | ||||||||
Protein Properties | Length: 344aa MW: 36139.3 Da PI: 7.1022 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 200.6 | 4.7e-62 | 113 | 270 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel.....kskkqsalsst 89 +g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqq++ +s + +++ +r + + l 678454674 113 NGGISCQDCGNQAKKDCTHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQQSETSGGKRQREtptvsnslV-----CTRIPtpsgnLNLDSHMLPLL 207 6789**********************************************999887765555544344332221.....122222222233334444455 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l++++ + le+ ++P++v ++avfrcvrvs+vd+ +++aYq+av+i GhvfkGiLydqG+e+ 678454674 208 QLEETSCVEGLEAGNFPSQVTAPAVFRCVRVSAVDE--DQFAYQAAVNIRGHVFKGILYDQGTEA 270 666666777777777*******************96..79**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.6E-59 | 115 | 269 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.4E-27 | 117 | 159 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.1E-23 | 223 | 267 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MAGFFTLGGA AAAAADPPIS SEIHPENWFL LRNEESVVPV SVPVPYRGFE LWQHQQQQRG 60 QGQEENNSLQ EMYGSGGGLG VGPSRGGGGL GDGSRPGFLM MRSAGAAAAA PGNGGISCQD 120 CGNQAKKDCT HMRCRTCCKS RGFQCQTHVK STWVPAAKRR ERQQQQSETS GGKRQRETPT 180 VSNSLVCTRI PTPSGNLNLD SHMLPLLQLE ETSCVEGLEA GNFPSQVTAP AVFRCVRVSA 240 VDEDQFAYQA AVNIRGHVFK GILYDQGTEA QYLAAVAAGD TSSGGGSISA GGHPLNLITG 300 TSTSGTPTAV VTGGPALPLL DTSFYPAPIN SFMAGTQFFP QSRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678454674 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100954.1 | 1e-106 | protein SHORT INTERNODES | ||||
Swissprot | K4B6C9 | 1e-91 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A2G9HGI3 | 1e-107 | A0A2G9HGI3_9LAMI; Uncharacterized protein | ||||
STRING | EOX90942 | 2e-99 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 7e-60 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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