PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678454369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26083.8 Da PI: 7.8422 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5.2e-19 | 73 | 126 | 2 | 55 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ ++t+eq++ Le+ F+k+ +++++e++ LA+kl+L+ rqV vWFqNrRa++ 678454369 73 RKKLRLTREQTTLLEDSFRKQTTLNTAEKQALAEKLKLKPRQVEVWFQNRRARY 126 678899**********************************************96 PP | |||||||
2 | HD-ZIP_I/II | 76.9 | 3.5e-25 | 73 | 128 | 1 | 56 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtkt 56 +kk+rl++eq +lLE+sF+++++L++ +K++la++L+l+prqv+vWFqnrRAR+ 678454369 73 RKKLRLTREQTTLLEDSFRKQTTLNTAEKQALAEKLKLKPRQVEVWFQNRRARYEE 128 69***************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.1E-17 | 60 | 126 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 65 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 69 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-14 | 71 | 133 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-16 | 73 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.25E-14 | 73 | 126 | No hit | No description |
Pfam | PF02183 | 2.3E-8 | 153 | 185 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.7E-9 | 153 | 196 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAMGEDELQL ELGLGLGFAK TEARRPKKRV FLVDIPTPNS SHRLLQDCKD SGLLMEEEDD 60 DYCDRNFSSE FGRKKLRLTR EQTTLLEDSF RKQTTLNTAE KQALAEKLKL KPRQVEVWFQ 120 NRRARYEESG LHGHAFMLGF SCVPLLHCRN KLKQTEVDYE FLKRSHERLL DENRRLNEEL 180 AKLRSHDIKK LDPLPGFLND RKAAPEETCE RRGCAAVGLE PPTLT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678454369 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837577.1 | 7e-39 | PREDICTED: homeobox-leucine zipper protein HOX17-like | ||||
Swissprot | A2XE76 | 3e-27 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 3e-27 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | S8DMC7 | 2e-38 | S8DMC7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.J01509.1.p | 4e-33 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-09 | homeobox from Arabidopsis thaliana |