PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678454312
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 886aa    MW: 97589.2 Da    PI: 5.7796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678454312genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161454748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      Ede++v +vk++G + W+tIa++++ gR +kqc++rw+++l
        678454312 14 KEDEIIVALVKKHGAKKWSTIAQHLP-GRIGKQCRERWHNHL 54
                     59************************.*************97 PP
2Myb_DNA-binding48.42.1e-1560102145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E++ l++a++++G++ W+  ++ ++ gR+++ +k++w+
        678454312  60 KEAWTQDEELTLIRAHQLYGNK-WAELSKFLP-GRSDNAIKNHWN 102
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.179154IPR017930Myb domain
SMARTSM007177.0E-101356IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-241461IPR009057Homeodomain-like
PfamPF139212.2E-151469No hitNo description
CDDcd001673.17E-131554No hitNo description
SuperFamilySSF466896.39E-2834110IPR009057Homeodomain-like
PROSITE profilePS5129424.00955109IPR017930Myb domain
SMARTSM007174.7E-1559107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2162109IPR009057Homeodomain-like
CDDcd001671.69E-1162102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MLSKSLPHFA NVDKEDEIIV ALVKKHGAKK WSTIAQHLPG RIGKQCRERW HNHLNPNINK  60
EAWTQDEELT LIRAHQLYGN KWAELSKFLP GRSDNAIKNH WNSSVKKKLE MYIASGLLSQ  120
FEGFPLVSHQ DQSLASSPSK ALQSSDANSF HKMELEETSE CSQISGFLGA SQSTSYATTH  180
PGEWRLTEES SSIQQHDGYF PEFEEPTFTL LPEEQNEMDN KFSEHDLSFC LETLSGKDWQ  240
VGPSKLPDMA LLDLVQEPHE LPLPTDPDNH EVMMSFPVDT SAGLSSSTSF VGMLMGADIP  300
ALVANSECMV DCSQASHNGA CPYESHTSEV ANTLLSTSAT QINEVYSSKS YDVPSDSSER  360
SPSQSFPTCP SSLLPPTHDG FIYSKESESS LVVEDCYEKN NSPRQVSPNQ FVLAPSEASP  420
CSPSKKTIEN KRNEQEAGTL CYEPPRFPSF DMPFFSCDLV QSGNDLQQEF SPFGIRQLMM  480
SSLAPIKLWD SPSRDDTPEK VLRSAAKTFS STPSILKKRH RDFVSPLSER RTEKKLERTS  540
RQEALSSLSG AFSRLDVMLD ECVCKSGPPL PVSPKKRSME VSSSENKNVV PTCPQIENEG  600
SRSLVISECE ISPKEVKREK DLTGVLIEHD VNDILISSLD QFGGKGGGGK SPSPSKTGHQ  660
CRRKLGSISN HVIFSTSENS CLPVTSPHHS GKKEGASLLL AASLPSSNSG DTVETTRKGA  720
IPECSGMYID TPLKRIMESP SAWKSPWFLK TFVPGPRVDT ELTLEDMGYF LPGDRSYDAI  780
GLMKQLGEHT ASTFADAKEV LGDETPDTIM KAKRIPFSST ERNNTANSGP DSQKDQITSH  840
PPSKFTVERR ALDFSQWGSP EKKPVKSNSG GGTSSSQCSY LLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-401411013109B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1642648GGKGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMap678454312
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090064.10.0transcription factor MYB3R-1 isoform X2
TrEMBLA0A2G9GJ310.0A0A2G9GJ31_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E01513.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-62Homeodomain-like protein