PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678454023
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 555aa    MW: 63094.1 Da    PI: 7.6924
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678454023genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-19388440456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + ++++eqle Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k
  678454023 388 KKRLSNEQLELLENSFQEEIKLDPDRKLKLSKELGLQPRQIAVWFQNRRARWK 440
                5569************************************************9 PP
2HD-ZIP_I/II117.19.7e-38387478293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kk+rls+eq++lLE+sF+ee kL+p+rK +l++eLglqprq+avWFqnrRAR+k kqlE+ y+aLk++yd++ +e+++L++ev +Lr+ lke
    678454023 387 KKKRLSNEQLELLENSFQEEIKLDPDRKLKLSKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEYDSVLREKQKLQQEVMALRAMLKE 478
                  9**************************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142991.8E-3614182IPR025886Phloem protein 2-like
SuperFamilySSF466893.94E-18379443IPR009057Homeodomain-like
PROSITE profilePS5007116.406382442IPR001356Homeobox domain
SMARTSM003894.3E-18385446IPR001356Homeobox domain
CDDcd000861.11E-16387443No hitNo description
PfamPF000465.5E-16388440IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-19389449IPR009057Homeodomain-like
PROSITE patternPS000270417440IPR017970Homeobox, conserved site
PfamPF021833.8E-8442476IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MQLVWLDKFT GKVRMSVSAS ALAITGVDDR RYWTWIPTEE SRFSVVAYLQ QIWWFEVDGV  60
VKFPFPPDVY LVSFRIHLGK FSRRLGRRVT NFEHTHGWEI RPVKFEISTS NGQQASAECL  120
LDDPHPEGSI GSYRRGCWIE YKVGKFIVSE SDAETEVRFS MKQIDCTHSK GGLCVDSVSI  180
TPLLVEERRR RGIQKCTFFG LEEMALVSPA NIRFFVSSSG SVPLKDTGSG IRHSAQKSHH  240
SWIFTLRSVL CCAVLCGNLS YGEVRPGFLI AAAFEFDCRV KEQVEQLMDA GGVFITVASS  300
SDNQKKKRIF IHLGKEEESG LMDWSGGLRF PFIPRQESSF SFMCNYNYDQ IPVLEMKQQS  360
MHQGMLPGLM DKGGAAAVNM SYGGDPKKKR LSNEQLELLE NSFQEEIKLD PDRKLKLSKE  420
LGLQPRQIAV WFQNRRARWK GKQLERLYDA LKQEYDSVLR EKQKLQQEVM ALRAMLKEQL  480
AKKQVSGGHT DQVSGEETVE STSIPSSEKL LVETQIPECN NYTLNVEDYN GGGLMMPAAY  540
WPPPQLPREV VNGDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434442RRARWKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678454023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.15e-38homeobox 51