PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453964
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 416aa    MW: 45838.9 Da    PI: 6.794
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453964genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.15e-102444101374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.....sseelaalklfsevsPilkfs 94 
                lv+lLl+cAe++++++l  a+++L ++ el+sp g+++qR+ ayf+ A+++r+   +  + k+  p+ +t + +      +++laa+++++ ++P++kfs
  678453964  44 LVQLLLRCAECLAADNLLDASQILPEILELSSPFGSSVQRVGAYFADAISSRVIA-CYVIGKSPvPCLPTLPLSlwkshYQKVLAAFQTYNSITPMIKFS 142
                689***************************************************9.44444443266665544455556899999*************** PP

       GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                h+taNqaI +av+g+++vH+iD+di+qGlQWp ++q Las+p++  slRiTg+g+    s + l +tg rLa+fA ++++pf+f+++  k  +  e+++L
  678453964 143 HFTANQAIQQAVDGADHVHVIDLDIMQGLQWPGFFQILASKPRKLKSLRITGLGP----SLDLLDSTGLRLAEFAGAVNIPFHFHAVEGKIGNISEIDQL 238
                *******************************************************....9**************************7666666679**** PP

       GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse..sFlerflealeyysalfdsleaklpreseerikvErellg 291
                +v+ gE+++V++++  h+l+d ++s       v +l+k ++Pk++++ve+  d+ ns+   Fl+rf+ al+yysalfd+l    ++es +r++vE++l+g
  678453964 239 KVRIGETVIVHWMH--HSLYDMTGSDLG----VFRLLKMIKPKLITIVERTYDLsNSGegGFLRRFIGALHYYSALFDALGDVSAPESLDRHTVEQQLFG 332
                *************9..999988888888....******************97765443339*******************6666999************* PP

       GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ei+n+++ ++++      ++e W +++   GF+ v+l+ +a +qa+lll +++++gy++ ee+g+l +gWk+ pL+++SaW+
  678453964 333 CEIRNILSLKKRD-----GEVEMWGKAMAGLGFRRVSLGGNASAQASLLLGMMPWRGYTLVEENGWLKMGWKNSPLLTASAWE 410
                *********9998.....7799************************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.59718390IPR005202Transcription factor GRAS
PfamPF035141.7E-9944410IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MASAGKRPIE DEVDEGISVT DPIKRHRAAA IGFERDSEEA GLRLVQLLLR CAECLAADNL  60
LDASQILPEI LELSSPFGSS VQRVGAYFAD AISSRVIACY VIGKSPVPCL PTLPLSLWKS  120
HYQKVLAAFQ TYNSITPMIK FSHFTANQAI QQAVDGADHV HVIDLDIMQG LQWPGFFQIL  180
ASKPRKLKSL RITGLGPSLD LLDSTGLRLA EFAGAVNIPF HFHAVEGKIG NISEIDQLKV  240
RIGETVIVHW MHHSLYDMTG SDLGVFRLLK MIKPKLITIV ERTYDLSNSG EGGFLRRFIG  300
ALHYYSALFD ALGDVSAPES LDRHTVEQQL FGCEIRNILS LKKRDGEVEM WGKAMAGLGF  360
RRVSLGGNAS AQASLLLGMM PWRGYTLVEE NGWLKMGWKN SPLLTASAWE TPDLPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1243541210380Protein SCARECROW
5b3h_A1e-124354129379Protein SCARECROW
5b3h_D1e-124354129379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100390.11e-180scarecrow-like protein 23
SwissprotQ9FHZ11e-145SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2Z7A7201e-169A0A2Z7A720_9LAMI; Uncharacterized protein
STRINGEOX931731e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-148GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]