PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453830
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 364aa    MW: 40983.1 Da    PI: 7.3536
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453830genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.39.1e-51641901129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrF P+deel+++yL + v+g ++++  vi++v+++k+ePw++p+++  + k+wyf++ rdkkyatg+r+nrat+ gyWkatgkd+++ + kg +v
  678453830  64 LPPGFRFYPRDEELICDYLMNWVAGLDHNF-PVITKVELNKCEPWEIPETACVGGKDWYFYCLRDKKYATGQRTNRATAFGYWKATGKDRPISR-KGIQV 161
                79*************************999.89***************7777799*************************************99.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g++ktLvfy+grapkg+k+dWvmhe+rle
  678453830 162 GMRKTLVFYQGRAPKGRKSDWVMHEFRLE 190
                **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5857214IPR003441NAC domain
PROSITE profilePS5100553.82364214IPR003441NAC domain
PfamPF023652.1E-2465189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLWGSPSPVL LRPSPLLSSP SIYVGSHGVY SAATWNSHPP LPTSPSTAQR DSKMNTLCNV  60
EANLPPGFRF YPRDEELICD YLMNWVAGLD HNFPVITKVE LNKCEPWEIP ETACVGGKDW  120
YFYCLRDKKY ATGQRTNRAT AFGYWKATGK DRPISRKGIQ VGMRKTLVFY QGRAPKGRKS  180
DWVMHEFRLE EGPSLKPTES TAKEDWVLCR VFKKRSEISS KQEAAASPAV DDWPRPSLPL  240
SDRSTAVDNR MAAAGSQYHD YEQVPCFSSL TPSQSKPYFS HFTTQQAQLA DAAEFMPDFS  300
VYTSSSALTN EDPSPCSKWD IKSVLNRFAK RETSFEQGGI YESGEGSCDS YLSEADLSCM  360
WKQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-526021613167NO APICAL MERISTEM PROTEIN
1ut4_B1e-526021613167NO APICAL MERISTEM PROTEIN
1ut7_A1e-526021613167NO APICAL MERISTEM PROTEIN
1ut7_B1e-526021613167NO APICAL MERISTEM PROTEIN
3swm_A2e-526021616170NAC domain-containing protein 19
3swm_B2e-526021616170NAC domain-containing protein 19
3swm_C2e-526021616170NAC domain-containing protein 19
3swm_D2e-526021616170NAC domain-containing protein 19
3swp_A2e-526021616170NAC domain-containing protein 19
3swp_B2e-526021616170NAC domain-containing protein 19
3swp_C2e-526021616170NAC domain-containing protein 19
3swp_D2e-526021616170NAC domain-containing protein 19
4dul_A1e-526021613167NAC domain-containing protein 19
4dul_B1e-526021613167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453830
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095676.11e-118NAC domain-containing protein 21/22-like
SwissprotQ84TE64e-85NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLH6VQ891e-103H6VQ89_CAMSI; NAC transcription factor
STRINGXP_007149262.12e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-87NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]