PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453786
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 315aa    MW: 34063.4 Da    PI: 5.8726
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453786genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-12121174155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s ++GV++++++gr++A+++d    +  +r  + + g+ gt eeAa+a++ a+ k++g
  678453786 121 SVFRGVTRHRWTGRYEAHLWD----NscRReGQTRKGRQGTQEEAAEAYDIAAIKFRG 174
                689***************999....3354469999********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.21E-12121183IPR016177DNA-binding domain
PfamPF008472.3E-8121174IPR001471AP2/ERF domain
CDDcd000183.21E-18121184No hitNo description
SMARTSM003805.6E-21122188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-11122182IPR001471AP2/ERF domain
PROSITE profilePS5103216.226122182IPR001471AP2/ERF domain
PRINTSPR003674.6E-6123134IPR001471AP2/ERF domain
PRINTSPR003674.6E-6164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGSSQEHQSW LDFSLTNNNH LSFSSQSTCA AAAPVGGYHH RFSNLEEYLN GGSGSSSGVA  60
TDGICGVNLY VDSDDLEVKR IGGAGNCCLD DDQKQITATP PEEPPAKKMA VAAENFGQRT  120
SVFRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQGTQEE AAEAYDIAAI KFRGVNAVTN  180
FDITRYDVES ITSSHLPIGN KVKAVEENKM VQEGQLITNK QDESSSSLPL WAALGFQNPT  240
PGPDPMFPSM MMMAHGHTPT YGMGLGLESS SANSNHHHAF YVPGSYSSYH GLSSNFIAGE  300
DNGTAEPPGK QPSVL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453786
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.26e-31AINTEGUMENTA-like 6