PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678453695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | CPP | ||||||||
Protein Properties | Length: 543aa MW: 58925.4 Da PI: 7.2211 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 24.1 | 7.1e-08 | 108 | 132 | 16 | 41 |
TCR 16 kYCeCfaagkkCseeCkCedCkNkee 41 YCeCfa+g +C+ C+C +C+N+ + 678453695 108 TYCECFASGIYCDG-CNCVNCHNNVD 132 5*************.********986 PP | |||||||
2 | TCR | 51.4 | 2.2e-16 | 176 | 215 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e 678453695 176 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 215 589***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.3E-4 | 88 | 133 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 30.111 | 98 | 216 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.9E-5 | 108 | 130 | IPR005172 | CRC domain |
SMART | SM01114 | 6.2E-20 | 176 | 217 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.5E-12 | 179 | 214 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MDQIEGGRLP PTNQLPSLSE ASSTAAVDFS ARKLVRQLDF TGFGSGPTGA EQQQMAKPIL 60 PPHQPPMPHM VKPAQSTKIP PQQMPFMGIQ NPCQLSGPLS NSLVRPLTYC ECFASGIYCD 120 GCNCVNCHNN VDNEAARREA VGATLERNPN AFRPKIASSP HGARDSRDEE GLATGKHNKG 180 CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNYEGSEER QALFHGDHAN MAFVQQAANA 240 AITGAIGSSG FGSPPYNKKR NGQDLLFGST LKDPISKFGQ FHQANHNEKT CIPSSSASSA 300 PADRPGGPPG RGPSKFAYRS LLADIIQPQD LKELCSVLVV YSGQTAKMLA GEGDVDKQAE 360 DLRVMYASTL QTSELPTHDK NPNDTSSFDD QTEKAGPEKC YSHGADLSKG RPVSPSTAAL 420 MCDEKDAMFT VSPKRLEVEN NMSYELPRER VVTKSYAEQE RIVLTKFREC LNRLITLGEI 480 KETRYSALLP TESANEKETT SSILKTNSKD VQSISNGLVN LPISLGASAV AVRNPSFLEN 540 QHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-25 | 90 | 225 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 1e-25 | 90 | 225 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678453695 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093606.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 1e-145 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2G9GSN4 | 0.0 | A0A2G9GSN4_9LAMI; Metallothionein-like protein | ||||
STRING | XP_006451190.1 | 1e-175 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-123 | Tesmin/TSO1-like CXC domain-containing protein |