PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678453493 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 137aa MW: 16192 Da PI: 5.128 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ E+ l+ +++ ++G++ W++I+r+++ gRt++++k++w++++ 678453493 2 SPREEHLIMELHSKWGNR-WSRISRRLP-GRTDNEIKNYWRTHM 43 789***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3E-8 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.734 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 2.74E-8 | 1 | 43 | No hit | No description |
Pfam | PF00249 | 6.5E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.2E-12 | 2 | 47 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MSPREEHLIM ELHSKWGNRW SRISRRLPGR TDNEIKNYWR THMRKEARAK KQKAATSTEE 60 SKGISTAAGE SEAGKTVEEW TEPCTMDDIW KDIEESSNEF TSKGEASSYW WDMDSIWEME 120 EEQKQMEWHA SLPRLVP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678453493 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089426.1 | 7e-31 | transcription factor MYB48 isoform X2 | ||||
Refseq | XP_020552655.1 | 7e-31 | transcription factor MYB59 isoform X1 | ||||
Swissprot | Q53NK6 | 1e-25 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A2G9I2H3 | 3e-31 | A0A2G9I2H3_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2G9I415 | 3e-31 | A0A2G9I415_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2G9I962 | 3e-31 | A0A2G9I962_9LAMI; Uncharacterized protein | ||||
STRING | AES88812 | 6e-29 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 6e-24 | myb domain protein 59 |
Publications ? help Back to Top | |||
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