PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678453351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10085.3 Da PI: 5.1441 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9e-10 | 11 | 53 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+eE + + a + + ++ +W+ +ar +g gRt++++k ++ 678453351 11 WTAEENKAFEIALAVFDKDtpdRWENVARSVG-GRTPEEVKKHY 53 ********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-6 | 4 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-8 | 7 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-13 | 9 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-7 | 11 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.72E-8 | 11 | 53 | No hit | No description |
PROSITE profile | PS50090 | 7.131 | 11 | 57 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MASRSISGRG WTAEENKAFE IALAVFDKDT PDRWENVARS VGGRTPEEVK KHYDILLEDI 60 MCIESGKVPF PNYITTTVAA PAAAAGGSTE RGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-38 | 1 | 76 | 1 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678453351 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092800.1 | 4e-37 | transcription factor RADIALIS-like isoform X1 | ||||
Swissprot | Q58FS3 | 8e-38 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2G9H3T4 | 7e-37 | A0A2G9H3T4_9LAMI; Uncharacterized protein | ||||
STRING | XP_009594360.1 | 4e-36 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 6e-33 | RAD-like 6 |
Publications ? help Back to Top | |||
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