PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453144
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 718aa    MW: 79688.7 Da    PI: 6.1893
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453144genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.33.6e-101271695599
                ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +++r++l++GW+ Fv++++L +gD ++F   + +++el+v+v+r+
  678453144 127 QPRRHLLQSGWSVFVSSKKLVAGDAFIFL--RGENGELRVGVRRA 169
                6789*************************..449999*****996 PP
2Auxin_resp120.61.2e-39194276183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tks+F+v+Y+Pr+s++eF+v+++++++++k+++++GmRfkm+fe+++s+e+r++G vvg++d+dp rWp+SkWr+Lk
   678453144 194 AWHAIQTKSMFTVFYKPRTSPTEFIVPYDQYMESVKNNCTIGMRFKMRFEGDESPEQRFTGSVVGIEDADPNRWPESKWRCLK 276
                 89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-10125197IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-6126168No hitNo description
Gene3DG3DSA:2.40.330.102.0E-14126183IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-7127169IPR003340B3 DNA binding domain
PROSITE profilePS508638.67130170IPR003340B3 DNA binding domain
PfamPF065071.1E-36194276IPR010525Auxin response factor
PfamPF023092.9E-10577680IPR033389AUX/IAA domain
SuperFamilySSF542773.24E-11591669No hitNo description
PROSITE profilePS5174521.827592680IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MLGEMGVAEV PIKGYGDDSG GNYVPEMRNS SVGEVDAETA LYTELWRACA GPLVTVPREN  60
ELVFYFPQGH IEQVVASTNQ SADQTMPVYN LPSKILCRVV NVSLKAEPET DEVFAQITLM  120
PEPNVGQPRR HLLQSGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRAM RHQSSSPSSV  180
ISSHSMHLGV LATAWHAIQT KSMFTVFYKP RTSPTEFIVP YDQYMESVKN NCTIGMRFKM  240
RFEGDESPEQ RFTGSVVGIE DADPNRWPES KWRCLKVRWD ETSSIMRPER VSPWKLEPAL  300
APPALNLHPV PRPKRPRSSI VPPSPDLSAL AREGPCKMTA DPSSAVGFPR IFHGQEMFSF  360
RGVFAESNES NPSDKHLRNP SVNDGILASR VYGSDRWAAM GQMDSSFSGF GPRILTSHHE  420
GDCGVAGNNQ STIPHQLSLG LTNSWMRTHD HGAHSSHCAR QDVRYVAMRD LPFIPDSGCD  480
HEQSNCTPDL TKPEIQSRVL IPKTVFSQTQ EPKPKEGICK IFGISITNES APVEAGSLER  540
SNHTQNGTLH QSITFESNQT KGAKTSDNPI MVNELEKQSQ SSHPLGGMKE SRSCTKVLKQ  600
GTALGRSVDL SKFHDYDGLI AELDNLFEFN GELKDRGKNW LVVYTDYEGD MMLVGDDPWE  660
EFVSMVRKYS KILILQKDEL QHLNPGYMNS KGDEDHSSGE GVSKEANDLP PPTPDPAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-794029818354Auxin response factor 1
4ldw_A1e-794029818354Auxin response factor 1
4ldw_B1e-794029818354Auxin response factor 1
4ldx_A1e-794029818354Auxin response factor 1
4ldx_B1e-794029818354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453144
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769543.10.0PREDICTED: auxin response factor 2-like isoform X2
SwissprotQ2LAJ30.0ARF2A_SOLLC; Auxin response factor 2A
TrEMBLA0A1U7VT580.0A0A1U7VT58_NICSY; Auxin response factor
STRINGMigut.I00613.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-165auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]
  3. Xu T, et al.
    SlARF2a plays a negative role in mediating axillary shoot formation.
    Sci Rep, 2016. 6: p. 33728
    [PMID:27645097]
  4. Ren Z,Liu R,Gu W,Dong X
    The Solanum lycopersicum auxin response factor SlARF2 participates in regulating lateral root formation and flower organ senescence.
    Plant Sci., 2017. 256: p. 103-111
    [PMID:28167023]