PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678453069
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92766.7 Da    PI: 6.0539
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678453069genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1852110357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  678453069  52 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 110
                5678*****************************************************97 PP
2START135.17.5e-431963732173
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+ +   ++a++ e+l d++  W ++++ +++++v+s+g  g+++l +++l+
  678453069 196 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCNGVASRACSLIGLEPARVAEILRDRS-IWHRDCRVVDVMNVLSTGtgGTIELLYMQLY 294
                789*******************************************************8888888888.******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-E.EEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
      START 100 alsplvp.RdfvfvRyirqlgagdw.vivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                al++l+p R+f+ +Ry+  + +g++ v++++S++++++ p+     ++vRae+lpSg+li+p+++g+s +++v h+dl+
  678453069 295 ALTTLAPaREFWLLRYTSLMDDGSLvVVCERSLNNTANGPSiphVENFVRAEMLPSGYLIRPCDGGGSILHIVNHMDLQ 373
                *******************666665166789*********9998899******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.43547111IPR001356Homeobox domain
SMARTSM003897.3E-1649115IPR001356Homeobox domain
SuperFamilySSF466897.27E-1751115IPR009057Homeodomain-like
CDDcd000861.79E-1652112No hitNo description
PfamPF000463.2E-1653110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-1854110IPR009057Homeodomain-like
CDDcd146861.64E-6104143No hitNo description
PROSITE profilePS5084823.158186392IPR002913START domain
SuperFamilySSF559618.38E-32187375No hitNo description
SMARTSM002348.0E-26195413IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-16195374IPR023393START-like domain
PfamPF018525.6E-40196373IPR002913START domain
PfamPF086704.9E-44701842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MDLLIKETES EGLRKTPSEY LTSSEPNALS VVMVAVTSAY KDGGKGGVDS GKYVRYTPEQ  60
VEALERLYHD CPKPSSLRRQ QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQAV  120
NRKLTAMNKL LMEENDRLQK QISQLVYENG YFRQRTQTAT LATTDNSCDS VVTSGQHRQT  180
PQNTPQDASP SGLLSIAEET LTEFLSKATG TAVEWVQMPG MKPGPDSIGI IAISHGCNGV  240
ASRACSLIGL EPARVAEILR DRSIWHRDCR VVDVMNVLST GTGGTIELLY MQLYALTTLA  300
PAREFWLLRY TSLMDDGSLV VVCERSLNNT ANGPSIPHVE NFVRAEMLPS GYLIRPCDGG  360
GSILHIVNHM DLQISQEACH PNATAWGRRP VVLRAIGQRM SRSFNEAVNS FPDQGWSSIQ  420
GDGVDDVSLL VNSSPGKLMG SVQNYSKGLP AMSNGVLCAK ASMLLQDVSP PVLLRFLHEH  480
RSEWADTGIE ACFATAGKPG AFSLSSTRQA APFGSHVILP LAPTIENDEF MEVIRLENVS  540
NINQNMTMPN DIFLLQMYNG VDENAVGACA ELIFAPIDDT FSDDTPLLPS GFRIMPLHTK  600
PDPSTPNPTL DLASTLEIGS AGHHFSKENS AAHGASESVM TIAFQFAFQF HLQDTVATMA  660
RQYIRSIISS VQRVATALSP SNSCARAGLR ASPGTLEAEA LGQWICQSYR FYLGTEMLKP  720
QKEGNGSIFK ALWQHSDAVM CCSLKASPVF MFANQAGLDM LETSLVALQD TRLDEVFNDN  780
GRKTLLAELP QIMQQGFGYL EGGFCLSSMS RLVSYEKAVA WNVLNQEEKV HCLCIMLINW  840
SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678453069
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081776.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A4D9B7850.0A0A4D9B785_SALSN; Homeobox-leucine zipper protein
STRINGMigut.A00196.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]