PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678452914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 200aa MW: 22582.8 Da PI: 9.1809 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85 | 4.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtf+kRrng+lKKA+ELSvLCd++v viifss+gk y y+s 678452914 9 KRIEDKSARQVTFAKRRNGLLKKAKELSVLCDVDVGVIIFSSRGKPYHYCS 59 79**********************************************996 PP | |||||||
2 | K-box | 36.3 | 2.3e-13 | 116 | 174 | 42 | 100 |
K-box 42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ s+ +L++Le+qLe +l + R+ K++ lle+i+ l k k+l ee+ +L+++++e 678452914 116 SVDEFSITDLMHLEKQLEIALFQTRAAKTHALLESIKGLHDKGKKLAEEKGSLEEQIAE 174 67899**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.002 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.40E-37 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 9.81E-30 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.122 | 81 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.5E-10 | 116 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGRRKREIKR IEDKSARQVT FAKRRNGLLK KAKELSVLCD VDVGVIIFSS RGKPYHYCST 60 TSFSDLLLQY QSYAENGQCA ATGTRQGGAE QRSKNSGSLS RNGFLDTLEK ELCEPSVDEF 120 SITDLMHLEK QLEIALFQTR AAKTHALLES IKGLHDKGKK LAEEKGSLEE QIAEIKRKRI 180 GSNKLLMDLN VLAEDQMMDW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 6e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 6e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 6e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_A | 6e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_B | 6e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_C | 6e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_D | 6e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678452914 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086821.1 | 4e-73 | MADS-box transcription factor 7-like isoform X1 | ||||
TrEMBL | A0A1S3X7B1 | 1e-57 | A0A1S3X7B1_TOBAC; agamous-like MADS-box protein AGL27 isoform X1 | ||||
TrEMBL | A0A1U7XSL9 | 1e-57 | A0A1U7XSL9_NICSY; agamous-like MADS-box protein AGL27 isoform X1 | ||||
STRING | XP_009795052.1 | 2e-58 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.2 | 8e-28 | MIKC_MADS family protein |