PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678452444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 25815.8 Da PI: 10.2931 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed ll +v+q+Ggg+W++ +++ g+ R++k+c++rw +yl 678452444 14 RGPWSAKEDALLSSYVQQHGGGRWRSLPEKAGLQRCGKSCRLRWMNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++ E +l+v+++++lG++ W++Ia +++ gRt++++k++w++yl 678452444 67 RGNMSEAEIDLIVRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTYL 112 899*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.508 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.717 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.95E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGKSPCCAKV GLRRGPWSAK EDALLSSYVQ QHGGGRWRSL PEKAGLQRCG KSCRLRWMNY 60 LRPGIKRGNM SEAEIDLIVR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT YLHKKMAPSS 120 LSENQKPTVR RSPGEPNNNN QSDTPRTTLY APKAVRISSP TSISRKVEPP PPPPPVTPPP 180 PPPPVTPPPP PLSLDGMQED LLGLGWRMLP GVSDGEVMLE KVYDEYLQLL Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678452444 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101013.1 | 7e-75 | transcription factor MYB6-like isoform X1 | ||||
TrEMBL | A0A286M5H5 | 2e-72 | A0A286M5H5_SALMI; Transcription factor | ||||
STRING | XP_010252819.1 | 5e-71 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-60 | myb domain protein 5 |