PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452444
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 231aa    MW: 25815.8 Da    PI: 10.2931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452444genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed ll  +v+q+Ggg+W++ +++ g+ R++k+c++rw +yl
        678452444 14 RGPWSAKEDALLSSYVQQHGGGRWRSLPEKAGLQRCGKSCRLRWMNYL 61
                     89********************************************97 PP

2Myb_DNA-binding50.74.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++ E +l+v+++++lG++ W++Ia +++ gRt++++k++w++yl
        678452444  67 RGNMSEAEIDLIVRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTYL 112
                      899*******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.508961IPR017930Myb domain
SuperFamilySSF466891.31E-2711108IPR009057Homeodomain-like
SMARTSM007173.7E-111363IPR001005SANT/Myb domain
PfamPF002494.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221568IPR009057Homeodomain-like
CDDcd001671.33E-91661No hitNo description
PROSITE profilePS5129423.71762116IPR017930Myb domain
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1467112IPR001005SANT/Myb domain
CDDcd001672.95E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2269116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGKSPCCAKV GLRRGPWSAK EDALLSSYVQ QHGGGRWRSL PEKAGLQRCG KSCRLRWMNY  60
LRPGIKRGNM SEAEIDLIVR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT YLHKKMAPSS  120
LSENQKPTVR RSPGEPNNNN QSDTPRTTLY APKAVRISSP TSISRKVEPP PPPPPVTPPP  180
PPPPVTPPPP PLSLDGMQED LLGLGWRMLP GVSDGEVMLE KVYDEYLQLL Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452444
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101013.17e-75transcription factor MYB6-like isoform X1
TrEMBLA0A286M5H52e-72A0A286M5H5_SALMI; Transcription factor
STRINGXP_010252819.15e-71(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-60myb domain protein 5