PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452391
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 276aa    MW: 30536.6 Da    PI: 9.0537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452391genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.7e-1473124155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  678452391  73 QRMTHIAVERHRRKQMNEHLSVLRSLMPES---YAQRGDQASIVGGAIDFVKELE 124
                79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.93E-1371128No hitNo description
SuperFamilySSF474593.4E-1671134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1471126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.47272123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1173124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-978129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MALEALSSAE LFNYILYDAH LQPPELLNNN NTVNSNNSVH HPPQEQQPDQ VPGRKKRRRR  60
PKVCKNKEEA ETQRMTHIAV ERHRRKQMNE HLSVLRSLMP ESYAQRGDQA SIVGGAIDFV  120
KELEHILQSL EAKKFAAGRS NGVEGSAADS GPFSQFFVYP QFSQLGNNKY TSQSKAAVAD  180
IEVTLIETHA NIRILSRRRI RLLSKLVLAF HVVSLSVLHL NVTTTDSVAL YSISAKVEEG  240
CQLTSADTIA AAVHHMLRII EDEASGAAAG VLGRPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359RKKRRRR
25459KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452391
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022731905.11e-110transcription factor bHLH71-like isoform X2
RefseqXP_022732027.11e-110transcription factor bHLH71-like isoform X1
SwissprotQ9C7T43e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2G9GIK01e-118A0A2G9GIK0_9LAMI; Uncharacterized protein
STRINGXP_009763212.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]