PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452250
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26730.4 Da    PI: 8.5911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452250genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12e-171868151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i + s+rqvtf+kR +g++KKA E S+ C++ + +   s+ gk++ +ss
  678452250 18 KKIADRSRRQVTFTKRHQGLFKKAAECSIICGVGITIYAKSPGGKVFKFSS 68
               6899*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.46E-181072IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.6141070IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-191069IPR002100Transcription factor, MADS-box
CDDcd001204.60E-221168No hitNo description
PRINTSPR004045.2E-151232IPR002100Transcription factor, MADS-box
PfamPF003191.8E-151966IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MECRVGKKTA GRCKIEIKKI ADRSRRQVTF TKRHQGLFKK AAECSIICGV GITIYAKSPG  60
GKVFKFSSAT PPHQSVRRSL FGGVKPSTNE NRAVYTPRAQ NLESDKGKNK ITEGPFWWER  120
DINDIHDLQE LQEFTAALIN LKNRVSAEME KSNAAYPSPL PWVAAQMDPS ATPWTIMDGF  180
PMKDFNSAVC WDPIQTNIQN FCHSDPTAAA PLQMNASDPE YSATEMPNLD DLELVVRTH
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-18M-type_MADS family protein