PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678451868
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 293aa    MW: 33114.1 Da    PI: 6.0326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678451868genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l+ +v+ +G g+W++++r  g+ R++k+c++rw +y+
        678451868 15 RGLWSPEEDQKLISYVTTYGHGCWSSVPRLAGLQRCGKSCRLRWINYM 62
                     788*******************************************97 PP
2Myb_DNA-binding51.13.1e-1668110145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg++T++E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
        678451868  68 RGNFTPQEAALIIELHRILGNR-WSQIAKYLP-GRTDNEVKNFWN 110
                      89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25665IPR009057Homeodomain-like
PROSITE profilePS5129417.6761062IPR017930Myb domain
SuperFamilySSF466899.36E-3013109IPR009057Homeodomain-like
SMARTSM007171.5E-121464IPR001005SANT/Myb domain
PfamPF002491.4E-151561IPR001005SANT/Myb domain
CDDcd001672.65E-111862No hitNo description
PROSITE profilePS5129425.3463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2566118IPR009057Homeodomain-like
SMARTSM007177.0E-1667115IPR001005SANT/Myb domain
PfamPF002499.7E-1568111IPR001005SANT/Myb domain
CDDcd001675.79E-1270110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MASHHTCCDR QKVNRGLWSP EEDQKLISYV TTYGHGCWSS VPRLAGLQRC GKSCRLRWIN  60
YMRPDVKRGN FTPQEAALII ELHRILGNRW SQIAKYLPGR TDNEVKNFWN SSIKKKLIAH  120
ARHLRPSDLY FAARLHHSPE NSSNLMIPNP ENEHPVIPSE PAMASFYCSI DSPFDQMMNP  180
VTKDSSWASP YDQPTGQDQD ESSPMLGFEN HRSYDVDREV LEALLPELDT GNSSSCSGFP  240
APMWGGCDEY TGGYFPGCEE MHPYHIDNIT SLMATFAQPD PPPECPPSSD SHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32151177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678451868
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072535.12e-86transcription factor MYB39
TrEMBLS8BS031e-102S8BS03_9LAMI; Uncharacterized protein
STRINGXP_004486846.13e-76(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-72myb domain protein 26