PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678451865

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 273aa MW: 30195.6 Da PI: 4.7289

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678451865	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.7e-39	41	139	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp++++++f n+h+lFG+sn++k++++l++ +++am+s++y+++ara dPv G++++i++l+++++ +kae + + + 678451865 41 ACAACKYQRRKCASDCILAPYFPHDSHRQFLNAHRLFGVSNIVKIVRHLDPAAKDQAMRSIIYQSDARAADPVGGCYRIIRDLENRIAMAKAEHEIVLH 139 7*******************************************************************************************9987755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.283	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-36	41	136	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MNQPPSSFLP NTNNYIRRNP KPPKSAAAPQ PSRSHGSTTQ ACAACKYQRR KCASDCILAP 60 YFPHDSHRQF LNAHRLFGVS NIVKIVRHLD PAAKDQAMRS IIYQSDARAA DPVGGCYRII 120 RDLENRIAMA KAEHEIVLHH LALFRAAATA TPLQTGDCYA AVEDVNSWPL ETVQTNAESV 180 SSSFPCQQET KNSPVEDCNN ADLIQPILDQ LDCDGDIGNE DVSLKFDFDG NLISSVEETE 240 GFKEEDDDCF GYVDDHEDLK AAATFFSLTN CDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-22	42	147	12	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-22	42	147	12	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678451865

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548603.1	1e-106	LOB domain-containing protein 7-like isoform X2
TrEMBL	A0A4D9B6C5	4e-97	A0A4D9B6C5_SALSN; Uncharacterized protein
STRING	Migut.D00966.1.p	2e-79	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	9e-50	LOB domain-containing protein 22