PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678451555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 30390.3 Da PI: 7.889 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.4e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl 678451555 14 RGPWSPEEDHKLKCYIEKHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.7e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd l+ ++ G++ W+ Ia+ ++ gRt++++k++w++ 678451555 69 GDFTEEEDNLICNLYIAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.591 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-17 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.85E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.932 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.39E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGRAPCCDKG NVKRGPWSPE EDHKLKCYIE KHGTGGNWIA LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTEEEDNLIC NLYIAIGSRW SIIAAQLPGR TDNDIKNYWN TRLRKKLLGR 120 QRRQQQQQSQ ECVWKYTQLP YLLPPECDRY FGNFTHVDQL QPIRAKENSD SFTGQEELFC 180 RNPMVDTDFV SFNEVQLGFS PLPQLVNGNS MDLASCLVSP ESLLNLEDTS SLLASVPHSW 240 EVFKEPKTSN GNENNLKGLD FSYSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 117 | 7 | 108 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678451555 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028772812.1 | 9e-82 | transcription factor RAX3-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 9e-77 | myb domain protein 68 |