PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678451555
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 265aa    MW: 30390.3 Da    PI: 7.889
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678451555genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl
        678451555 14 RGPWSPEEDHKLKCYIEKHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding41.72.7e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd l+ ++    G++ W+ Ia+ ++ gRt++++k++w++
        678451555  69 GDFTEEEDNLICNLYIAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.591962IPR017930Myb domain
SuperFamilySSF466894.79E-2811109IPR009057Homeodomain-like
SMARTSM007171.2E-121364IPR001005SANT/Myb domain
PfamPF002492.0E-171462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-241569IPR009057Homeodomain-like
CDDcd001672.85E-91662No hitNo description
PROSITE profilePS5129422.93263117IPR017930Myb domain
SMARTSM007173.4E-1267115IPR001005SANT/Myb domain
PfamPF002497.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2470117IPR009057Homeodomain-like
CDDcd001672.39E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAPCCDKG NVKRGPWSPE EDHKLKCYIE KHGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTEEEDNLIC NLYIAIGSRW SIIAAQLPGR TDNDIKNYWN TRLRKKLLGR  120
QRRQQQQQSQ ECVWKYTQLP YLLPPECDRY FGNFTHVDQL QPIRAKENSD SFTGQEELFC  180
RNPMVDTDFV SFNEVQLGFS PLPQLVNGNS MDLASCLVSP ESLLNLEDTS SLLASVPHSW  240
EVFKEPKTSN GNENNLKGLD FSYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap678451555
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028772812.19e-82transcription factor RAX3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.19e-77myb domain protein 68