PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678451405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24278.5 Da PI: 4.8341 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 69 | 116 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +rEr RR+++N++f eL +l + + K +K + L A++ +++L 678451405 69 SKAIRERLRREKLNERFLELSAILEPG---RPVKADKLALLGDAIRLLNQL 116 6789**********************8...89**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.335 | 65 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-10 | 67 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.82E-6 | 68 | 119 | No hit | No description |
Pfam | PF00010 | 4.0E-6 | 69 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-7 | 71 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-9 | 71 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDSIDDDSEW LGSLLNGMGE APDFEWNPLS DSVALEAATG GTPSHESECT ESGCTRKRAR 60 SDSCGGTVSK AIRERLRREK LNERFLELSA ILEPGRPVKA DKLALLGDAI RLLNQLKAES 120 LDYKESNEKL LEEIKCLKAE KNELRQEKQV LKAEKETIEQ QLKAMSTPGL IPTLPSVYQA 180 NFNKVPVIPS YGLVPMWQYL PQATRDTSQD HELRPPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678451405 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091209.1 | 8e-90 | transcription factor bHLH104 | ||||
Refseq | XP_011091210.1 | 8e-90 | transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 1e-72 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A2R6RUR3 | 1e-81 | A0A2R6RUR3_ACTCH; Transcription factor bHLH104 like | ||||
STRING | XP_009775135.1 | 1e-80 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4762 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 3e-61 | bHLH family protein |