PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678450566

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 326aa MW: 35656.2 Da PI: 10.0465

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678450566	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.7	4.2e-20	44	135	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf.erspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqlea 87 +W+ +e+ aLi+a+r+++ +lrrg+l++++W+ev++ + r + +++++qC++k+e+l+kry++ +++ + + ss++++f++++a 678450566 44 CWSAEETVALIDAYRDKWYSLRRGNLRANHWQEVADGVasRCPAIpSKTAVQCRHKMEKLRKRYRADIQRAAAHggVRRFSSSWVHFQKMHA 135 7***********************************5422333589*************988888777556999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-20	43	136	No hit	No description
PROSITE profile	PS50090	6.481	45	104	IPR017877	Myb-like domain
SMART	SM00595	5.1E-10	52	141	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MATTVSPSSP SNPDDDLLPT ATLALPSAVA VSASASSRRL PPPCWSAEET VALIDAYRDK 60 WYSLRRGNLR ANHWQEVADG VASRCPAIPS KTAVQCRHKM EKLRKRYRAD IQRAAAHGGV 120 RRFSSSWVHF QKMHAMERGP NPNPTPPSSS DEEEDEHQNS VKRIRDLYSQ NHKAVSVAQM 180 PENNNGASGG FRIKIPGGMN PASRAPKFDL PNSRYSNSAP GVNGGGSGKP MKDGFGGFRE 240 MAKRGSDVSK ASPGFDEVIA AIHSLGEGFA RSEMAKMEML KEIDQMRLES ERKRTEMIME 300 CQHMILEALS DSSARRSRTP PGGGLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678450566

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093230.1	1e-137	trihelix transcription factor ASIL2
TrEMBL	A0A2G9HZ49	1e-138	A0A2G9HZ49_9LAMI; Transcription factor GT-2
STRING	Migut.N01727.1.p	1e-115	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-56	Trihelix family protein