PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678450531
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 932aa    MW: 103947 Da    PI: 4.7694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678450531genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding66.74.1e-213176147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEde++v +v+++G + W+tIa++++ gR +kqc++rw+++
        678450531 31 KGPWTQEEDEIIVALVTKHGARKWSTIAQHLP-GRIGKQCRERWHNH 76
                     79******************************.************97 PP
2Myb_DNA-binding48.42.2e-1583125145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E++ l++a++++G++ W+  ++ ++ gR+++ +k++w+
        678450531  83 KEAWTQDEELTLIRAHQLYGNK-WAELSKFLP-GRSDNAIKNHWN 125
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-10537IPR009057Homeodomain-like
PROSITE profilePS500904.379525IPR017877Myb-like domain
PROSITE profilePS5129431.9162681IPR017930Myb domain
SuperFamilySSF466892.02E-3028124IPR009057Homeodomain-like
SMARTSM007171.4E-173079IPR001005SANT/Myb domain
PfamPF002497.2E-183176IPR001005SANT/Myb domain
CDDcd001671.37E-153376No hitNo description
Gene3DG3DSA:1.10.10.602.1E-263885IPR009057Homeodomain-like
SMARTSM007174.7E-1582130IPR001005SANT/Myb domain
PROSITE profilePS5129419.25882132IPR017930Myb domain
PfamPF002493.0E-1483126IPR001005SANT/Myb domain
CDDcd001671.82E-1185125No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2086132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MLFCLAECIK GRTDVQCLHR WQKVLNPELV KGPWTQEEDE IIVALVTKHG ARKWSTIAQH  60
LPGRIGKQCR ERWHNHHNPN INKEAWTQDE ELTLIRAHQL YGNKWAELSK FLPGRSDNAI  120
KNHWNSSVKK KLDIYIASGL LSQFEGFPLV SHQDQSVASS PSKLLQSCDA DSFVKIELEE  180
ECSQISGFSC ASQSTSYATT HPGEDCRVTG NSSPILTHDV YFPEFEEPTF NLPEEHSKMG  240
NKFPEHDLSL CVETSSSKDW QVGPNNHEAM LPFSVDSSDG LNSSASFVDM LMGVEVPALV  300
ANSETVMDDT EADPNVSCPS ETNNPSVTDI HEAYSSGFHY MPSDMLEKTL SRSLSFPSCL  360
SPMLPGTPDG FIYSKESESS LPVEECYEKN DSPGPIFPDE IVLEPPKDSP CSLSKETTES  420
KRDEKDAGTL CYEPPHFPSF DMPFFSCDLV QSGNDLQQEF SPFGIRQLMM MSSLVPIKLW  480
DSPSRDDTPE KVLRSAAKTF SSTPSILKKR HRDFLSPLSE RRTEKKIERN SRQDTLSSLS  540
GAFSRLDVML DECACKSVSS NKENLKVSCS ENKNVVPTGP QIESSKSLVI SECDVSLKEF  600
KSSELLDRTT DNRSVMDVRN AVTTVKDLAG VLTEHDANDL LISSLDQTYR KLDFISKHVI  660
FSSSENSCLS VICSPPFSAK KRSANLFSEP GEKAETTCKG AVPECSGMYI ETPLKRIMES  720
PSAWKSPWFL KTFVPGPTVD TELTLEDMGY FLPGECTYDA IGLMKQLGEH TAETFADAKE  780
VLGDETPDTI AKAKGITLSR TEPNNEQIAC QPSSKFTIEN VIHFGGRTAQ VERRALDFSA  840
WGSPESKSAK PSSSVPSYLL KECSLVVSIQ RNYSIIGIFD FLQQVIHFNL DIMVVVVLYS  900
TFDDDLETIT FFFIFQDIKI DPKNMAYPIK DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-59513232159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-59513232159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678450531
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089667.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089827.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089990.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553179.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553183.10.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A2G9GJ310.0A0A2G9GJ31_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E01513.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.25e-83myb domain protein 3r-4