PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678450345

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 163aa MW: 18045.2 Da PI: 9.4301

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678450345	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.0005	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H 678450345 47 FSCNFCPRKFCSSQALGGHQNAH 69 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.75E-6	43	74	No hit	No description
PROSITE profile	PS50157	10.803	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MAGEEKADQK TTPHSSEEWL NLGLGREREP SQESSGRQSR ITSAKLFSCN FCPRKFCSSQ 60 ALGGHQNAHK RERGAVKQYQ TQRMMMHASG TRSLGVQPHS LVHKPVVKDS RIAASLRSTN 120 MGVESSRLGE EAGSMWPGSF RMDTREQDGN PCNSNALDLD LKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678450345

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088194.1	9e-49	zinc finger protein 4-like
TrEMBL	A0A022RFD8	3e-42	A0A022RFD8_ERYGU; Uncharacterized protein (Fragment)
TrEMBL	A0A314UBL9	2e-42	A0A314UBL9_PRUYE; Zinc finger protein 7-like
STRING	Migut.B00401.1.p	2e-43	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3269	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-16	C2H2 family protein